Job Description P0A8M3 Confidence 100.00% Date Thu Jan 5 11:08:11 GMT 2012 Rank 13 Aligned Residues 366 % Identity 23% Template c1h4tD_ PDB info PDB header:aminoacyl-trna synthetase Chain: D: PDB Molecule:prolyl-trna synthetase; PDBTitle: prolyl-trna synthetase from thermus thermophilus complexed2 with l-proline Resolution 2.9 Å

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		220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		G	T	A	W	A	D	K	K	A	L	N	A	.	Y	L	Q	R	L	E	E	A	A	K	R	D	H	R	K	I	G	K	Q	L	D	L	Y	H	M	Q	E	E	A	P	G	M	V	F	W	H	N	D	G	W	T	I	F	R	E	L	E	V	F	V	R	S	K	L	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M
Query Conservation														.
Alig confidence					.									.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	T	.	P	Q	S	Q	D	F	S	E	W	Y	L	E	V	I	Q	K	A	E	L	A	D	Y	G	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	T	I	V	V	R	P	Y	G	Y	A	I	W	E	N	I	Q	Q	V	L	D	R	M	F	K	E	T	G	H	Q	N	A	Y	F	P	L	F
Template Known Secondary structure					.		T	T	T													T	T	S					S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T																										T	T								S
Template Predicted Secondary structure					.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.														.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		M	D	R	V	L	W	E	K	T	G	H	W	D	N	Y	K	D	A	M	F	T	T	S	S	E	.	N	R	E	Y	C	I	K	P	M	N	C	P	G	H	V	Q	I	F	N	Q	G	L	K	S	Y	R	D	L	P	L	R	M	A	E	F	G	S	C	H	R	N	E	P	S	G	S	L	H	G	L	M	R	V	R
Query Conservation																											.
Alig confidence														.	.	.	.										.																																															.	.
Template Conservation														.	.	.	.																																																									.	.
Template Sequence		I	P	M	S	F	L	F	S	P	E	L	A	.	.	.	.	V	V	T	H	A	G	G	E	E	L	E	E	P	L	A	V	R	P	T	S	E	T	V	I	G	Y	M	W	S	K	W	I	R	S	W	R	D	L	P	Q	L	L	N	Q	W	G	N	V	V	R	W	E	M	R	T	R	.	.	P	F	L	R	T	S
Template Known Secondary structure				G	G	G				S	S			.	.	.	.						T	T											S																B	G	G	G																S	S		B	.	.	T	T	T	B		S
Template Predicted Secondary structure														.	.	.	.																																																									.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.					.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.
		378	.	380	.	.	.	.	.		.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		G	F	T	Q	D	D	A	H	.	I	F	C	T	E	E	Q	I	R	D	E	V	N	G	C	I	R	L	V	Y	D	M	Y	S	T	F	G	F	E	K	I	V	V	K	L	S	T	R	P	E	K	R	I	G	S	D	E	M	W	D	R	A	E	A	D	L	A	V	A	L	E	E	N	N	I	P	F	E	Y	Q	L
Query Conservation										.
Alig confidence										.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	F	L	W	Q	E	G	H	T	A	H	A	T	R	E	E	A	E	E	E	V	R	R	M	L	S	I	Y	A	R	L	A	R	E	Y	A	A	I	P	V	I	E	G	L	K	T	E	K	E	K	F	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													S	S																																		G	G	G	S		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.		.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure																													.																																																		.	.	.
Query SS confidence																													.																																																		.	.	.
Query Sequence		G	E	G	A	F	Y	G	P	K	I	E	F	T	L	Y	D	C	L	D	R	A	W	Q	C	G	T	V	.	Q	L	D	F	S	L	P	S	R	L	S	A	S	Y	V	G	E	D	N	E	R	K	V	P	V	M	I	H	R	A	I	L	G	S	M	E	R	F	I	G	I	L	T	E	E	F	A	G	F	.	.	.
Query Conservation																													.																																																		.	.	.
Alig confidence		.	.	.														.	.										.																							.	.	.																									.	.	.
Template Conservation		.	.	.														.	.																																	.	.	.
Template Sequence		.	.	.	A	V	Y	T	T	T	I	E	A	L	M	K	D	.	.	G	K	A	L	Q	A	G	T	S	H	Y	L	G	E	N	F	A	R	A	F	D	I	K	F	Q	D	R	D	L	Q	V	K	.	.	.	Y	V	H	T	T	S	W	G	L	S	W	R	F	I	G	A	I	I	M	T	H	G	D	D	R	G	L
Template Known Secondary structure		.	.	.		S										T	T	.	.	S													T						T	T						T	T	S				.	.	.											T												B	T	T	B
Template Predicted Secondary structure		.	.	.														.	.																																	.	.	.
Template SS confidence
					208	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.				.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
			533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.						.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.		.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.
Predicted Secondary structure		.																	.	.	.	.	.																													.
Query SS confidence		.																	.	.	.	.	.																													.
Query Sequence		.	F	P	T	W	L	A	P	V	Q	V	V	I	M	N	I	T	.	.	.	.	.	D	S	Q	S	E	Y	V	N	E	L	T	Q	K	L	S	N	A	G	I	R	V	K	A	D	L	R	N	E	.	K	I	G	F	K	I	R	E	H	T	L	R	R	V	P	Y	M	L	V	C	G	D	K	E	V	E	S	G	K
Query Conservation		.																	.	.	.	.	.																													.
Alig confidence		.																	.	.	.	.	.																													.
Template Conservation
Template Sequence		V	L	P	P	R	L	A	P	I	Q	V	V	I	V	P	I	Y	K	D	E	S	R	E	R	V	L	E	A	A	Q	G	L	R	Q	A	L	L	A	Q	G	L	R	V	H	L	D	D	R	D	Q	H	T	P	G	Y	K	F	H	E	W	E	L	K	G	V	P	F	R	V	E	L	G	P	K	D	L	E	G	G	Q
Template Known Secondary structure					T	T	T		S		S									T	T	T																	T	T	T									T	T	S															S												T	T
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		606	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	V	R	T	R	R	G	K	D	L	G	S	M	D	V	N	E	V	I	E	K	L	Q	Q	E	I	R	S	R	S	L	K	Q	L	E
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		A	V	L	A	S	R	L	G	.	G	K	E	T	L	P	L	A	A	L	P	E	A	L	P	G	K	L	D	A	F	H	E	E	L	Y	R
Template Known Secondary structure							T	T	S	.							T	T	T
Template Predicted Secondary structure										.
Template SS confidence
		360	.	.	.	.	.	.	.		.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.