Job Description P0A8M3 Confidence 100.00% Date Thu Jan 5 11:08:11 GMT 2012 Rank 9 Aligned Residues 365 % Identity 19% Template c1ggmB_ PDB info PDB header:ligase Chain: B: PDB Molecule:protein (glycyl-trna synthetase); PDBTitle: glycyl-trna synthetase from thermus thermophilus complexed with2 glycyl-adenylate Resolution 3.40 Å

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		255	.	.	.	.	260							.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.			.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.																										.	.																																								.	.
Query SS confidence								.	.	.	.	.	.																										.	.																																								.	.
Query Sequence		H	M	Q	E	E	A	.	.	.	.	.	.	P	G	M	V	F	W	H	N	D	G	W	T	I	F	R	E	L	E	V	F	V	R	S	K	L	.	.	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M	M	D	R	V	L	W	E	K	T	G	H	W	D	N	Y	K	D	A	M	F	T	T	S	S	E	N	.	.
Query Conservation								.	.	.	.	.	.																										.	.																																								.	.
Alig confidence								.	.	.	.	.	.																										.	.																																								.	.
Template Conservation
Template Sequence		F	I	F	Q	S	S	E	I	Y	G	G	L	Q	G	V	Y	D	Y	G	P	L	G	V	E	L	K	N	N	L	K	Q	A	W	W	R	R	N	V	Y	E	R	D	D	M	E	G	L	D	A	S	V	L	T	H	R	L	V	L	H	Y	S	G	H	E	A	T	F	A	D	P	M	V	D	N	A	K	A	R	Y	W
Template Known Secondary structure		S				T	T	G	G	G	T			T	T																									T	S		S	S								S										T	S	T	T	G	G	G		S		B				S	S	S
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
																							325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	Y	C	I	K	P	M	N	C	P	G	H	V	Q	I	F	N	Q	G	L	K	.	S	Y	R	D	L	P	L	R	M	A	E	F	G	S	C	H	R	N	E	P	S	G	S	L	H	G	L	M	R	V	R	G	F	T	Q	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.																								.
Template Conservation																																																																					.
Template Sequence		T	P	P	R	Y	F	N	M	M	F	Q	D	L	R	G	P	R	G	G	R	G	L	L	A	Y	L	R	P	E	T	A	Q	G	I	F	V	N	F	K	N	V	L	D	A	T	S	R	K	L	G	F	G	I	A	Q	I	G	K	A	F	R	N	E	I	T	P	R	.	N	F	I	F	R	V	R	E	F	E	Q	M
Template Known Secondary structure					B					S						S	S	S			G	G	G						S	S	T																			S	S														S	S		B	.	T	T	T	T	B		S
Template Predicted Secondary structure																																																																					.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.			.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		D	A	H	I	F	C	T	E	E	Q	I	R	D	E	V	N	G	C	I	R	L	V	Y	D	M	Y	S	T	F	G	F	E	K	I	V	V	K	L	S	T	R	P	.	.	E	K	R	I	G	S	D	E	M	W	D	R	A	E	A	D	L	A	V	A	L	E	E	N	N	I	P	F	E	Y	Q	L	G	E	G	A
Query Conservation																																												.	.
Alig confidence																																												.	.												.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	E	Y	F	V	R	P	G	E	D	E	Y	W	H	R	Y	W	V	E	E	R	L	K	W	W	Q	E	M	G	L	S	R	E	N	L	V	P	Y	Q	Q	P	P	E	S	S	A	H	Y	A	K	A	T	V	D	.	.	.	.	.	.	.	.	.	.	I	L	Y	R	F	P	H	G	S	L	E	L	E	G	I
Template Known Secondary structure									G	G	G																			T	T			G	G	G								T	T	T			T	T							.	.	.	.	.	.	.	.	.	.						S	S
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.											.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.		.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure																																							.																																				.	.	.	.	.	.	.
Query SS confidence																																							.																																				.	.	.	.	.	.	.
Query Sequence		F	Y	G	P	K	I	E	F	T	L	Y	D	C	L	D	R	A	W	Q	C	G	T	V	Q	L	D	F	S	L	P	S	R	L	S	A	S	Y	.	V	G	E	D	N	E	R	K	V	P	V	M	I	H	R	A	I	L	G	S	M	E	R	F	I	G	I	L	T	E	E	F	A	G	F	.	.	.	.	.	.	.
Query Conservation																																							.																																				.	.	.	.	.	.	.
Alig confidence												.																											.																		.	.																	.	.	.	.	.	.	.
Template Conservation												.																																													.	.
Template Sequence		A	Q	R	T	D	F	D	L	G	S	.	H	T	K	D	Q	E	A	L	G	I	T	A	R	V	L	R	N	E	H	S	T	Q	R	L	A	Y	R	D	P	E	T	G	K	W	F	V	P	Y	V	I	E	P	S	A	.	.	G	V	D	R	G	V	L	A	L	L	A	E	A	F	T	R	E	E	L	P	N	G	E
Template Known Secondary structure						S						.			T	T	T	T	T	T	T			S						S			S	S				B			S	S	S				B										.	.																		B		S	S	S	S
Template Predicted Secondary structure												.																																													.	.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.		.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.			.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
								533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.				.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																	.	.	.
Query SS confidence		.	.	.	.	.	.																	.	.	.
Query Sequence		.	.	.	.	.	.	F	P	T	W	L	A	P	V	Q	V	V	I	M	N	I	T	.	.	.	D	S	Q	S	E	Y	V	N	E	L	T	Q	K	L	S	N	A	G	I	R	V	K	A	D	L	R	N	E	K	I	G	F	K	I	R	E	H	T	L	R	R	V	P	Y	M	L	V	C	G	D	K	E	V	E	S
Query Conservation		.	.	.	.	.	.																	.	.	.
Alig confidence		.	.	.	.	.	.																	.	.	.
Template Conservation
Template Sequence		E	R	I	V	L	K	L	K	P	Q	L	A	P	I	K	V	A	V	I	P	L	V	K	N	R	P	E	I	T	E	Y	A	K	R	L	K	A	R	L	L	A	L	G	L	G	R	V	L	Y	E	D	T	G	N	I	G	K	A	Y	R	R	H	D	E	V	G	T	P	F	A	V	T	V	D	Y	D	T	I	G	Q
Template Known Secondary structure		B								G	G	G	S	S		S						S		S	S																	T	T	T	S	S								S												T	T		S											S
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
		604										.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.
Query Sequence		G	.	.	.	.	.	.	.	.	.	K	V	A	V	R	T	R	R	G	K	D	L	G	S	M	D	V	N	E	V	I	E	K	L	Q	Q	E	I	R
Query Conservation			.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	K	D	G	T	T	R	L	K	D	T	V	T	V	R	D	R	D	T	M	E	Q	I	R	L	H	V	D	E	L	E	G	F	L	R	E	R	L	R
Template Known Secondary structure			S	S				S	S	T	T							T	T	T																			S
Template Predicted Secondary structure
Template SS confidence
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.