Job Description P0A8M3 Confidence 100.00% Date Thu Jan 5 11:08:11 GMT 2012 Rank 15 Aligned Residues 363 % Identity 14% Template c1g5hA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:mitochondrial dna polymerase accessory subunit; PDBTitle: crystal structure of the accessory subunit of murine mitochondrial2 polymerase gamma Resolution 1.95 Å

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		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		Q	R	L	E	E	A	A	K	R	D	H	R	K	I	G	K	Q	L	D	L	Y	H	M	Q	E	E	.	A	P	G	M	V	F	W	H	N	D	G	W	T	I	F	R	E	L	E	V	F	V	R	S	K	L	K	E	Y	Q	Y	Q	E	V	K	G	P	F	M	M	D	R	V	L	W	E	K	T	G	H	W	D	N
Query Conservation																												.
Alig confidence													.	.														.																									.
Template Conservation													.	.																																							.
Template Sequence		A	L	V	D	L	C	R	R	R	H	F	.	.	L	S	G	T	P	Q	Q	L	S	T	A	A	L	L	S	G	C	H	A	R	F	G	P	L	G	V	E	L	R	K	N	L	A	S	Q	W	W	S	.	S	X	V	V	F	R	E	Q	V	F	A	V	D	S	L	H	Q	E	P	G	S	S	Q	P	R	D	S	A
Template Known Secondary structure										T	T	S	.	.	B				G	G	G	G	S									S			B																		.			T	T	T		T	T								S							S	S
Template Predicted Secondary structure													.	.																																							.
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		313	.	.																		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.
Query Sequence		Y	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	M	F	T	T	S	S	E	N	R	E	Y	C	I	K	P	M	N	C	P	G	H	V	Q	I	F	N	Q	G	L	K	.	S	Y	R	D	L	P	L	R	M	A	E	F	G	S	C	H	R	N	E	P	S	G	S	L	H	G	L	M
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.																				.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.
Template Sequence		F	R	L	V	S	P	E	S	I	R	E	I	L	Q	D	S	K	E	Q	L	V	A	F	L	E	N	L	L	K	T	S	G	K	L	R	A	T	L	L	H	G	A	L	E	H	Y	V	N	C	L	D	L	V	N	R	K	L	P	F	G	L	A	Q	I	G	V	C	F	H	P	V	.	.	.	.	.	.	.	S	T
Template Known Secondary structure			B																													S					S		S							T								T	T	T	B	S															.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.								190	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	R	G	F	T	Q	D	D	A	H	I	F	C	T	E	E	Q	I	R	D	E	V	N	G	C	I	R	L	V	Y	D	M	Y	S	T	F	G	F	E	K	I	V	V	K	L	S	T	R	P	E	K	R	I	G	S	D	E	M	W	D	R	A	E	A	D	L	A	V	A	L	E	E	N	N	I	P	F	E	Y
Query Conservation
Alig confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	G	E	K	T	E	A	S	L	V	W	F	T	P	T	R	T	S	S	Q	W	L	D	F	W	L	R	H	R	L	L	W	W	R	K	F	A	X	S	P	S	N	F	S	S	A	D	C	Q	D	E	L	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	S	K	L	Y	Y	S	F
Template Known Secondary structure																																					T	T		S	S	G	G	G									T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.																	.	260	.	.	.	.	.	.	.
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		Q	L	G	E	G	A	F	Y	G	P	K	I	E	F	T	L	Y	D	C	L	D	R	A	W	Q	C	G	T	V	Q	L	D	F	S	L	P	S	R	L	S	A	S	Y	V	G	E	D	N	E	R	K	V	P	V	M	I	H	R	A	I	L	G	S	M	E	R	F	I	G	I	L	T	E	E	F	A	G	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.															.																																									.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Sequence		P	W	G	K	E	P	I	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	L	W	N	L	G	D	Q	E	L	L	H	T	Y	P	.	G	N	V	S	T	I	Q	G	R	D	G	R	K	N	V	V	P	C	V	L	S	V	S	G	D	V	D	L	G	T	L	A	Y	L	Y	D	S	F	Q	L	R	K	V
Template Known Secondary structure		T	T								.	.	.	.	.	.	.	.	.	.	.	.	.						S							S	T	.	T		G	G	G	S					T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template SS confidence
		268	.	270	.	.	.	.	.	.														.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
			532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550				.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.				.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.
Predicted Secondary structure		.																				.	.	.																						.	.	.
Query SS confidence		.																				.	.	.																						.	.	.
Query Sequence		.	F	F	P	T	W	L	A	P	V	Q	V	V	I	M	N	I	T	D	S	.	.	.	Q	S	E	Y	V	N	E	L	T	Q	K	L	S	N	A	G	I	R	V	K	A	.	.	.	D	L	R	N	E	K	I	G	F	K	I	R	E	H	T	L	R	R	V	P	Y	M	L	V	C	G	D	K	E	V	E	S	G
Query Conservation		.																				.	.	.																						.	.	.
Alig confidence		.																				.	.	.																						.	.	.
Template Conservation
Template Sequence		L	K	L	H	P	C	L	A	P	I	K	V	A	L	D	V	G	K	G	P	T	V	E	L	R	Q	V	C	Q	G	L	L	N	E	L	L	E	N	G	I	S	V	W	P	G	Y	S	E	T	V	H	S	S	L	E	Q	L	H	S	K	Y	D	E	X	S	V	L	F	S	V	L	V	T	E	T	T	L	E	N	G
Template Known Secondary structure						T	T	T		S									S	S																			T	T						G	G	G	S				S												T	T		S
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		605	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	A	V	R	T	R	R	G	K	D	L	G	S	M	D	V	N	E	V	I	E	K	L	Q	Q	E	I	R	S	R	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	Q	L	R	S	R	D	T	T	X	K	E	X	X	H	I	S	K	L	R	D	F	L	V	K	Y	L	A	S	A	S
Template Known Secondary structure								T	T	T								T	T	S
Template Predicted Secondary structure
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.