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Job DescriptionP0A8M3
Confidence100.00%DateThu Jan 5 11:08:11 GMT 2012
Rank4Aligned Residues401
% Identity100%Templatec1fyfB_
PDB info PDB header:ligaseChain: B: PDB Molecule:threonyl-trna synthetase; PDBTitle: crystal structure of a truncated form of threonyl-trna2 synthetase complexed with a seryl adenylate analog
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   242.......250.........260.........270.........280.........290.........300.........310.........320.
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Query Sequence  RDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTS
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Template Conservation    
   
    
        
    

 
  
   
           
  

 

 

  

       
         
Template Sequence  RDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTS
Template Known Secondary structure 

TT


TTSTT


TT




STGGG

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   242.......250.........260.........270.........280.........290.........300.........310.........320.
 
   322.......330.........340.........350.........360.........370.........380.........390.........400.
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Query Sequence  SENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCI
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Template Conservation       
 


  
    
           

 
 
 

  

 
      

 
 


 
   
  
          
 
Template Sequence  SENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCI
Template Known Secondary structure  TT
S
STSS

BGGG
S



GGG
BTTTB
S
GGG
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   322.......330.........340.........350.........360.........370.........380.........390.........400.
 
   402.......410.........420.........430.........440.........450.........460.........470.........480.
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Query Sequence  RLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCG
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Template Conservation           

                   
        
                              
         
Template Sequence  RLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCG
Template Known Secondary structure  T
S




SS

S
TT

TT
SBTTB

TT

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   402.......410.........420.........430.........440.........450.........460.........470.........480.
 
   482.......490.........500.........510.........520.........530.........540.........550.........560.
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Query Sequence  TVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQK
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Template Conservation     

          
    
              
  


  
        
   

  
 

         
  
   
Template Sequence  TVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQK
Template Known Secondary structure  SSTT


TTS


TT


TTT
SS
SSGGG
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   482.......490.........500.........510.........520.........530.........540.........550.........560.
 
   562.......570.........580.........590.........600.........610.........620.........630.........640.
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Query Sequence  LSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRSLKQLE
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Template Conservation 

  

 
  
      

    
   
    



  
     



   
  
  
   

   
   
         
Template Sequence  LSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRSLKQLE
Template Known Secondary structure  TT



SS
TT
S
TTT

TT
SS
S
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   562.......570.........580.........590.........600.........610.........620.........630.........640.
 
   642
Predicted Secondary structure 
Query SS confidence 
Query Sequence  E
Query Conservation   
Alig confidence 
Template Conservation   
Template Sequence  E
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 
   642
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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