 |
Job Description | P0ADF6 | Confidence | 21.10% | Date | Thu Jan 5 11:20:54 GMT 2012 |
Rank | 60 | Aligned Residues | 38 |
% Identity | 21% | Template | c2dhgA_ |
PDB info |
PDB header:rna binding protein | Chain: A: PDB Molecule:trna selenocysteine associated protein (secp43); |
PDBTitle: solution structure of the c-terminal rna recognition motif2 in trna selenocysteine associated protein
|
Resolution | UNK |
|
  |   |
443 | . | . | . | . | . | . | 450 | |
. | . | . | . | . | . | . | . | . | 460 | . | |
|
. | . | . | . | . | |
. | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  | . |  |
|
|  |  |  |  |  |  |  |  | . | . |  |
|
|
|
| . |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | I | E | A | P | A | V | V | . |
F | E | S | Q | H | D | V | M | P | A | F | . |
. |
E | A | G | L | L | . |
D | R | D | C | V | V | V | V | R | H | Q | G | P | K |
Query Conservation |   |
  |   |   |
|   |
|   |
| . |
|   |
|
|
|
|
|   |   |
|
| . | . |   |   |
|   |
| . |   |   |
|
|
|
|
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|
|   |
|   |   |   |
|   |
|   |   |
|
|   |   |   |   |
|   |   |   |   |   |
|
|   |
|   |
|   |   |
|   |   |   |
Template Sequence |   |
V | S | K | G | Y | G | F | V | K | F | T | D | E | L | E | Q | K | R | A | L | T | E | C | Q | G | A | V | G | L | G | S | K | P | V | R | L | S | V | A | I | P | K |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  | T | T | T |
|
| S | S | S | S | S |
|
|
|
|
| B |
|
|
|
|
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
135 | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|