Job Description P0A754 Confidence 99.83% Date Thu Jan 5 11:04:51 GMT 2012 Rank 30 Aligned Residues 158 % Identity 22% Template c2zkiH_ PDB info PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) Resolution 2.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.											.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																										.																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.																		.	.	.	.	.	.	.	.	.	.
Query Sequence		I	L	I	I	Y	A	H	P	Y	P	H	H	S	H	A	N	K	R	M	L	E	Q	A	R	.	T	L	E	G	V	E	I	R	S	L	Y	Q	L	Y	P	D	F	.	.	.	.	.	.	.	.	.	.	N	I	D	I	A	A	E	Q	E	A	L	S	R	A	D	L	I	V	W	Q	H	P	M	Q	W	Y	S	I
Query Conservation																										.																		.	.	.	.	.	.	.	.	.	.
Alig confidence									.																	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation									.
Template Sequence		I	L	V	L	F	Y	G	.	Y	G	S	I	V	E	L	A	K	E	I	G	K	G	A	E	E	A	G	A	E	V	K	I	R	R	V	R	E	T	L	P	P	E	F	Q	S	R	I	P	F	D	K	V	K	D	I	P	E	V	T	L	D	D	M	R	W	A	D	G	F	A	I	G	S	P	T	R	Y	G	N	M
Template Known Secondary structure									.	S	S																	T												S		G	G	G		T	T			G	G	G	S	T	T	S		B										S									B	T	T	B
Template Predicted Secondary structure									.
Template SS confidence
		7	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.	.
Query Sequence		P	P	L	L	K	L	W	I	D	K	V	F	S	H	G	W	A	Y	G	H	G	G	T	A	L	H	G	K	H	L	L	W	A	V	T	T	G	G	G	E	S	H	F	E	I	G	A	H	P	G	F	D	V	L	S	Q	P	L	Q	A	T	A	I	Y	C	G	L	N	W	L	P	.	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.																					.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.																					.	.	.	.	.	.	.	.
Template Sequence		A	G	G	L	K	T	F	L	D	T	T	A	I	L	.	.	.	.	.	W	K	D	N	V	L	Y	G	K	P	V	T	F	F	T	E	A	S	T	V	.	.	.	.	.	.	.	.	H	G	G	H	E	T	T	I	L	T	M	S	T	Y	A	Y	H	F	G	M	I	I	V	P	I	G	Y	G	I	P	E	L	F
Template Known Secondary structure											T	T				.	.	.	.	.		T	T	T	T	T	T	T									B	S	S	T	.	.	.	.	.	.	.	.	T	S	S	S	S							T							T							T	T		S	T
Template Predicted Secondary structure																.	.	.	.	.																					.	.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.						100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.									120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
											142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	P	F	A	M	H	C	T	F	I	C	D	D	E	T	L	E	G	Q	A	R	H	Y	K	Q	R	L	L	E	W	Q	E	A
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	T	T	T	G	G	G	P	Y	G	A	T	H	L	G	S	K	E	E	L	D	E	M	E	R	K	I	A	R	F	Q	G	K	R	I	T	E	V	A	K	A
Template Known Secondary structure				S	S	S		B	T	T	B				B	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions