Job Description P76270 Confidence 93.05% Date Thu Jan 5 12:21:25 GMT 2012 Rank 43 Aligned Residues 149 % Identity 10% Template c3qp1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:cvir transcriptional regulator; PDBTitle: crystal structure of cvir ligand-binding domain bound to the native2 ligand c6-hsl Resolution 1.55 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		M	N	K	T	E	F	Y	A	D	L	N	R	D	F	N	A	L	M	A	G	E	T	S	F	L	A	T	L	A	N	T	S	A	L	L	Y	E	R	L	T	D	I	N	W	A	G	F	Y	L	L	E	D	D	T	L	V	L	G	P	F	Q	G	K	I	A	C	V	R	I	P	V	G	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence									.	.																		.														.																																.	.	.	.	.	.	.	.
Template Conservation									.	.																		.														.
Template Sequence		L	T	A	S	Q	Q	W	.	.	T	L	L	E	W	I	H	M	A	G	H	I	E	T	E	N	E	.	L	K	A	F	L	D	Q	V	L	S	Q	A	P	.	S	E	R	L	L	L	A	L	G	R	L	N	N	Q	N	Q	I	Q	R	L	E	R	V	L	N	V	S	Y	P	S	D	W	L	D	Q	Y	M	K	E
Template Known Secondary structure									.	.										T	T			S				.										T	T	S	S	.		S											T	T	S											S	S	S											T
Template Predicted Secondary structure									.	.																		.														.
Template SS confidence
		16	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
							73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.								.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure		.	.	.	.	.																										.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																										.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	R	G	V	C	G	T	A	V	A	R	N	Q	V	Q	R	I	E	D	V	H	V	F	D	G	H	.	.	.	.	.	.	.	I	A	C	D	A	A	S	N	S	E	I	V	L	P	L	V	V	K	N	Q	I	I	G	V	L	D	I	D	S	T	V	F	G	R	F	T	D	E	D	E	Q	G	L
Query Conservation		.	.	.	.	.																										.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																										.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	Y	A	Q	H	D	P	I	L	R	I	H	L	G	Q	G	P	V	M	W	E	E	R	F	N	R	A	K	G	A	E	E	K	R	F	I	A	E	A	T	Q	N	G	M	G	S	G	I	T	F	S	A	A	S	E	R	N	N	I	G	S	I	L	S	I	A	G	R	E	P	G	R	N	A	A	L	V	A	M	L
Template Known Secondary structure		T	G	G	G	T		G	G	G	G	S		T	T	S											T			S													T	T		S	S									T	T	T	T									S	S	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		141	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	L	V	A	Q	L	E	K	V	L	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	C	L	T	P	H	L	H	Q	A	A	I	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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