Job Description P76270 Confidence 30.86% Date Thu Jan 5 12:21:25 GMT 2012 Rank 59 Aligned Residues 117 % Identity 10% Template c3bjnA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, putative; PDBTitle: crystal structure of c-terminal domain of putative transcriptional2 regulator from vibrio cholerae, targeted domain 79-240 Resolution 1.65 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.									.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	E	T	S	F	L	A	T	L	A	N	T	S	A	L	L	Y	E	R	L	T	D	I	N	W	A	G	F	Y	L	L	E	D	D	T	L	V	L	G	P	F	Q	G	K	I	.	.	.	.	.	.	.	.	A	C	V	R	I	P	V	G	R	G	V	C	G	T	A	V	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.																							.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.
Template Sequence		E	T	S	Q	H	N	L	D	A	V	E	A	V	L	S	R	L	Q	K	Q	T	G	.	.	E	X	A	A	Y	X	V	P	V	G	Y	R	A	L	C	V	S	Q	R	E	S	X	Q	A	L	R	C	S	F	V	Q	G	Q	S	Q	P	L	L	R	G	A	S	S	K	V	X	L	A	Y	X	P	A	A	R	C	E
Template Known Secondary structure		T	T	T	S	T	T																S	.	.	S									T	T											S	S					S			T	T					T	T	S											S
Template Predicted Secondary structure																								.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
																									81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	N	Q	V	Q	R	I	E	D	V	H	V	F	D	G	H	I	A	C	D	A	A	S	N	S	E	I	V	L	P	L	V	V	K	N	Q	I	I	G	V	L	D	I	D	S	T	V	F	G	R	F	T	D	E	D	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.																										.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.																										.
Template Sequence		K	I	L	R	Y	F	G	E	D	P	T	L	D	K	W	Q	S	E	F	E	K	I	R	R	H	G	Y	A	V	S	T	S	E	I	D	P	G	V	.	.	.	.	.	.	.	.	.	.	S	G	I	S	A	P	V	X	K	G	S	K	L	I	G	A	I	S	V	X	A	P	A	H	R	.	V	E	S	N	K	Q
Template Known Secondary structure							T	T			T	T	S														T	S					S	S	S	S	T	T		.	.	.	.	.	.	.	.	.	.										T	T															.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.																										.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.											.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	L	R	Q	L	V	A	Q	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	I	L	H	V	L	Q	A	A	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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