Job Description P76270 Confidence 99.31% Date Thu Jan 5 12:21:25 GMT 2012 Rank 39 Aligned Residues 151 % Identity 10% Template c2veaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:phytochrome-like protein cph1; PDBTitle: the complete sensory module of the cyanobacterial2 phytochrome cph1 in the pr-state. Resolution 2.21 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.									.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.
Query Sequence		D	F	N	A	L	M	A	G	E	T	S	F	L	A	T	L	A	N	T	S	A	L	L	Y	E	R	L	T	D	I	N	W	A	G	F	Y	L	L	E	D	D	T	L	V	L	G	P	F	Q	G	K	I	A	C	V	R	I	P	V	G	.	.	.	.	.	.	.	.	R	G	V	C	G	T	A	V	A	R	N	Q
Query Conservation																																																														.	.	.	.	.	.	.	.
Alig confidence																													.																																	.	.	.	.	.	.	.	.
Template Conservation																													.
Template Sequence		H	M	A	N	A	A	L	N	R	L	N	L	R	D	F	Y	D	V	I	V	E	E	V	R	R	M	T	.	G	F	D	R	V	M	L	Y	R	F	D	E	N	N	H	G	D	V	I	A	E	D	K	R	D	D	M	E	P	Y	L	G	L	H	Y	P	E	S	D	I	P	Q	P	A	R	R	L	F	I	H	N	P
Template Known Secondary structure																													.			S									T	T	S											T	T	S				T	T					G	G	G	S												S
Template Predicted Secondary structure																													.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.																														100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	Q	R	I	E	D	V	H	V	F	D	G	H	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	D	A	A	S	N	S	E	I	V	L	P	L	V	V	K	N	Q	I	I	G	V	L	D	I	D	S	T	V	F	G	R	F	T	D	E
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	R	V	I	P	D	V	Y	G	V	A	V	P	L	T	P	A	V	N	P	S	T	N	R	A	V	D	L	T	E	S	I	L	R	S	A	Y	H	C	H	L	T	Y	L	K	N	M	G	V	G	A	S	L	T	I	S	L	I	K	D	G	H	L	W	G	L	I	A	C	H	H	Q	T	P	K	V	I	P	F	E
Template Known Secondary structure						S		S	S	S							S	S			T	T	T	T						T	T		S	S	B														T		S										T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	Q	G	L	R	Q	L	V	A	Q	L	E	K	V	L	A	T	T	D	Y	K	K	F	F	A	S	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	K	A	C	E	F	F	G	R	V	V	F	S	N	I	S	A	Q	E	D	T	E	T	F	D	Y	R	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions