Job Description P76270 Confidence 8.33% Date Thu Jan 5 12:21:25 GMT 2012 Rank 74 Aligned Residues 146 % Identity 5% Template c2q0oA_ PDB info PDB header:transcription Chain: A: PDB Molecule:probable transcriptional activator protein trar; PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing Resolution 2.00 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.
Query Sequence		N	R	D	F	N	A	L	M	A	G	E	T	S	F	L	A	T	L	A	N	T	S	A	L	L	Y	E	R	L	T	D	I	N	W	A	G	F	Y	L	L	E	D	D	T	L	V	L	G	P	F	Q	G	K	I	A	C	V	R	.	.	.	.	.	I	P	V	G	R	G	V	C	G	T	A	V	A	R	N	Q	V
Query Conservation																																																												.	.	.	.	.
Alig confidence																														.	.																													.	.	.	.	.
Template Conservation																														.	.
Template Sequence		L	R	S	L	I	D	M	L	E	A	A	Q	D	G	H	M	I	K	I	A	L	R	S	F	A	H	S	C	.	.	G	Y	D	R	F	A	Y	L	Q	K	D	G	T	Q	V	R	T	F	H	S	Y	P	G	P	W	E	S	I	Y	L	G	S	D	Y	F	N	I	D	P	V	L	A	E	A	K	R	R	R	D	V
Template Known Secondary structure														S																.	.	T											T	T								S											T	T	G	G	G	T												S
Template Predicted Secondary structure																														.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100										.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.
Query Sequence		Q	R	I	E	D	V	H	V	F	D	G	H	I	A	C	.	.	.	.	.	.	.	.	.	D	A	A	S	N	S	E	I	V	L	P	L	V	V	K	N	Q	I	I	G	V	L	D	I	D	S	T	V	F	G	R	F	T	D	E	D	E	Q	G	L	R	Q	L	V	A	Q	L	E	K	V	L	A	T	T	D	Y
Query Conservation																	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	F	W	T	A	D	A	W	P	A	R	G	S	S	P	L	R	R	F	R	D	E	A	I	S	H	G	I	R	C	G	V	T	I	P	V	E	G	S	Y	G	S	A	M	M	L	T	F	A	S	P	E	R	K	V	D	I	S	G	V	L	D	P	K	K	A	V	Q	L	L	M	M	V	H	Y	Q	L	K	I	I
Template Known Secondary structure						S	T	T	S			S	S														T	T												G	G	G										S	S	S					T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		157	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		165	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions