Job Description P76270 Confidence 99.65% Date Thu Jan 5 12:21:25 GMT 2012 Rank 31 Aligned Residues 158 % Identity 9% Template c2oolA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of the chromophore-binding domain of an unusual2 bacteriophytochrome rpbphp3 from r. palustris Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.								.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.
Query Sequence		M	N	K	T	E	F	Y	A	D	L	N	R	D	F	N	A	L	M	A	G	E	T	S	F	L	A	T	L	A	N	T	S	A	L	L	Y	E	R	L	T	D	I	N	W	A	G	F	Y	L	L	E	D	D	T	L	V	L	G	P	F	Q	G	K	.	.	.	.	.	.	.	I	A	C	V	R	I	P	V	G	R
Query Conservation																																																																	.	.	.	.	.	.	.
Alig confidence																																																																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	R	Y	T	N	E	F	F	R	S	V	R	V	A	I	R	R	L	Q	T	A	A	D	L	P	T	A	C	W	I	A	A	S	E	V	R	R	I	T	G	F	D	R	I	K	V	Y	Q	F	A	A	D	W	S	G	Q	V	I	A	E	D	R	D	S	G	I	P	S	L	L	D	F	H	F	P	S	S	D	I	P
Template Known Secondary structure			S																		T			S																			S									T	T	S											T	T					T	T					G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.																														.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	V	C	G	T	A	V	A	R	N	Q	V	Q	R	I	E	D	V	H	V	F	D	G	H	I	A	C	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	N	S	E	I	V	L	P	L	V	V	K	N	Q	I	I	G	V	L	D	I
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	Q	S	R	A	L	Y	T	I	N	P	V	R	I	I	P	D	I	G	Y	R	P	S	P	L	V	P	D	I	N	P	R	L	G	G	P	I	D	L	S	F	S	V	L	R	S	V	S	P	T	H	L	E	Y	M	V	N	M	G	M	H	A	A	M	S	I	S	I	V	R	D	N	R	L	W	G	M	I	S	C
Template Known Secondary structure											S						S		T	T								S				T	T	T		S	S				T	T		T	T	B														T												T	T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	T	V	F	G	R	F	T	D	E	D	E	Q	G	L	R	Q	L	V	A	Q	L	E	K	V	L	A	T	T	D	Y	K	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	N	L	T	P	R	F	V	S	Y	E	V	R	Q	A	C	E	L	I	A	Q	V	L	T	W	Q	I	G	V	L	E	E	A	E
Template Known Secondary structure				S	S
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions