Job Description P76270 Confidence 96.70% Date Thu Jan 5 12:21:25 GMT 2012 Rank 42 Aligned Residues 147 % Identity 11% Template c2gx5B_ PDB info PDB header:transcription Chain: B: PDB Molecule:gtp-sensing transcriptional pleiotropic repressor cody; PDBTitle: n-terminal gaf domain of transcriptional pleiotropic repressor cody Resolution 1.74 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.								70	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.
Query Sequence		M	N	K	T	E	F	Y	A	D	L	N	R	D	F	N	A	L	M	A	G	E	T	S	F	L	A	T	L	A	N	T	S	A	L	L	Y	E	R	L	T	D	I	N	W	A	G	F	Y	L	L	E	D	D	T	L	V	L	G	P	F	Q	G	K	I	A	C	V	R	I	.	.	.	.	.	.	.	P	V	G	R
Query Conservation																																																																							.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.																												.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.
Template Sequence		M	A	L	L	Q	K	T	R	I	I	N	S	M	L	Q	A	A	A	G	K	P	V	N	F	K	E	M	A	E	T	L	R	D	V	I	.	.	.	.	.	.	.	D	S	N	I	F	V	V	S	R	R	G	K	L	L	G	Y	S	I	N	Q	Q	I	E	N	D	R	M	K	K	M	L	E	D	R	Q	F	P	E
Template Known Secondary structure																	S				S																.	.	.	.	.	.	.	T	S							T	T	S	B							S	S														T	B
Template Predicted Secondary structure																																					.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.								.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.				.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		G	V	C	G	T	A	V	A	R	N	Q	V	Q	R	I	E	D	V	H	V	F	D	G	H	.	.	.	I	A	C	D	A	A	S	N	S	E	I	V	L	P	L	V	V	K	N	Q	I	I	G	V	L	D	I	D	S	T	V	F	G	R	F	T	D	E	D	E	Q	G	L	R	Q	L	V	A	Q	L	E	K	V
Query Conservation																										.	.	.
Alig confidence																										.	.	.																																.
Template Conservation																																																												.
Template Sequence		E	Y	T	K	N	L	F	N	V	P	E	T	S	S	N	L	D	I	N	S	E	T	A	F	P	V	E	N	R	D	L	F	Q	A	G	L	T	T	I	V	P	I	I	G	G	G	E	R	L	G	T	L	I	L	S	R	L	Q	.	D	Q	F	N	D	D	D	L	I	L	A	E	Y	G	A	T	V	V	G	M	E
Template Known Secondary structure									T			S							T	T					S		G	G	G	G	G	G	G	S	S	S										T	T											S	S	.
Template Predicted Secondary structure																																																												.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		151	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	T	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	R	E	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions