Job Description P76270 Confidence 18.66% Date Thu Jan 5 12:21:25 GMT 2012 Rank 66 Aligned Residues 138 % Identity 13% Template c1h0mD_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna Resolution 3.0 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.
Query Sequence		N	R	D	F	N	A	L	M	A	G	E	T	S	F	L	A	T	L	A	N	T	S	A	L	L	Y	E	R	L	T	D	I	N	W	A	G	F	Y	L	L	E	D	D	T	L	V	L	G	P	F	Q	G	K	I	A	C	V	R	.	.	.	.	.	I	P	V	G	R	G	V	C	G	T	A	V	A	R	N	Q	V
Query Conservation																																																												.	.	.	.	.
Alig confidence															.																.																													.	.	.	.	.
Template Conservation															.																.
Template Sequence		L	D	K	L	T	D	L	A	A	I	E	G	D	.	E	C	I	L	K	T	G	L	A	D	I	A	D	H	F	.	G	F	T	G	Y	A	Y	L	H	I	Q	H	R	H	I	T	A	V	T	N	Y	H	R	Q	W	Q	S	T	Y	F	D	K	K	F	E	A	L	D	P	V	V	K	R	A	R	S	R	K	H	I
Template Known Secondary structure									T	T					.																.	T		S									S	S								S											T	T	T	T	T	T									T			S
Template Predicted Secondary structure															.																.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100										.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.
Query Sequence		Q	R	I	E	D	V	H	V	F	D	G	H	I	A	C	.	.	.	.	.	.	.	.	.	D	A	A	S	N	S	E	I	V	L	P	L	V	V	K	N	Q	I	I	G	V	L	D	I	D	S	T	V	F	G	R	F	T	D	E	D	E	Q	G	L	R	Q	L	V	A	Q	L	E	K	V	L	A
Query Conservation																	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation																																																							.	.
Template Sequence		F	T	W	S	G	E	H	E	R	P	T	L	S	K	D	E	R	A	F	Y	D	H	A	S	D	F	G	I	R	S	G	I	T	I	P	I	K	T	A	N	G	F	X	S	X	F	T	X	A	S	D	K	P	.	.	V	I	D	I	D	A	V	A	A	A	A	T	I	G	Q	I	H	A	R	I	S
Template Known Secondary structure						S	S	T	T	T	T	S	S		S											T	T	T												G	G	G										S	S	S	.	.	S
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions