Phyre 2 alignment of P0AEW9 with c1tz6B

Job Description P0AEW9
Confidence 100.00% Date Thu Jan 5 11:24:29 GMT 2012

Rank 40 Aligned Residues 276

% Identity 29% Template c1tz6B_

PDB info PDB header:transferase Chain: B: PDB Molecule:putative sugar kinase; PDBTitle: crystal structure of aminoimidazole riboside kinase from2 salmonella enterica complexed with aminoimidazole riboside3 and atp analog

Resolution 2.70 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence	R	R	V	A	T	I	T	L	N	P	A	Y	D	L	V	G	F	C	P	E	I	E	R	G	E	V	N	L	V	K	T	T	G	L	H	A	A	G	K	G	I	N	V	A	K	V	L	K	D	L	G	I	D	V	T	V	G	G	F	L	G	K	D	.	N	Q	D	G	F	Q	Q	L	F	S	E	L	G	I	A	N
Query Conservation																																																																.
Alig confidence								.													.	.	.	.	.	.	.	.	.	.																																		.
Template Conservation								.													.	.	.	.	.	.	.	.	.	.
Template Sequence	N	K	V	W	V	I	G	.	D	A	S	V	D	L	V	P	E	K	Q	N	.	.	.	.	.	.	.	.	.	.	S	Y	L	K	C	P	G	G	A	S	A	N	V	G	V	C	V	A	R	L	G	G	E	C	G	F	I	G	C	L	G	D	D	D	A	G	R	F	L	R	Q	V	F	Q	D	N	G	V	D	V
Template Known Secondary structure								.										S	T	T	.	.	.	.	.	.	.	.	.	.																			T	T	T											S	S													T	T
Template Predicted Secondary structure								.													.	.	.	.	.	.	.	.	.	.
Template SS confidence
	5	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.											.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.

	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence	R	F	Q	V	V	Q	G	R	T	R	I	N	V	K	L	T	E	K	D	G	E	V	T	D	F	N	F	S	G	F	E	V	T	P	A	D	W	E	R	F	V	T	D	S	L	S	W	L	G	Q	F	D	M	V	C	V	S	G	.	S	L	P	S	G	V	S	P	E	A	F	T	D	W	M	T	R	L	R	S	Q
Query Conservation																																																											.
Alig confidence																	.	.	.	.	.	.	.	.	.	.																																	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.
Template Sequence	T	F	L	R	L	D	A	D	L	T	S	A	V	L	I	V	.	.	.	.	.	.	.	.	.	.	N	F	T	Y	L	V	H	P	G	A	D	T	Y	V	S	P	Q	D	L	P	P	F	R	Q	Y	E	W	F	Y	F	S	S	I	G	L	T	D	R	P	A	R	E	A	C	L	E	G	A	R	R	M	R	E	A
Template Known Secondary structure							S	S	S								.	.	.	.	.	.	.	.	.	.				B			S	S		G	G	G	G			G	G	G						T	T							G	G	G	G	S	S																	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.											90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.

	161	.	.	.	.	.	.	.	.	170												.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.
Query Sequence	C	P	C	I	I	F	D	S	S	R	.	.	.	.	.	.	.	.	.	.	.	E	A	L	V	A	G	L	K	A	A	P	W	L	V	K	P	N	R	R	E	L	E	I	W	A	G	R	K	L	P	E	M	K	D	V	I	E	A	A	H	A	L	R	E	Q	G	I	A	H	V	V	I	S	L	G	A	E	G	A
Query Conservation											.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Template Conservation																																																			.	.	.	.	.
Template Sequence	G	G	Y	V	L	F	D	V	N	L	R	S	K	M	W	G	N	T	D	E	I	P	E	L	I	A	R	S	A	A	L	A	S	I	C	K	V	S	A	D	E	L	C	Q	L	S	G	A	S	H	.	.	.	.	.	W	Q	D	A	R	Y	Y	L	R	D	L	G	C	D	T	T	I	I	S	L	G	A	D	G	A
Template Known Secondary structure	T											G	G	G		S	S	T	T														S																S	S	.	.	.	.	.	G	G	G	S	T	T					T	T		S							G	G	G
Template Predicted Secondary structure																																																			.	.	.	.	.
Template SS confidence
	152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.						.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.

	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270						.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.			.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																										.	.	.	.	.																						.	.
Query SS confidence																																										.	.	.	.	.																						.	.
Query Sequence	L	W	V	N	A	S	G	E	W	I	A	K	P	P	S	V	D	V	V	S	T	V	G	A	G	D	S	M	V	G	G	L	I	Y	G	L	L	M	R	E	S	.	.	.	.	.	S	E	H	T	L	R	L	A	T	A	V	A	A	L	A	V	S	Q	S	N	V	.	.	G	I	T	D	R	P	Q	L	A	A	M
Query Conservation																																										.	.	.	.	.																						.	.
Alig confidence																																										.	.	.	.	.																						.	.
Template Conservation
Template Sequence	L	L	I	T	A	E	G	E	F	H	F	P	A	P	R	V	D	V	V	D	T	T	G	A	G	D	A	F	V	G	G	L	L	F	T	L	S	R	A	N	C	W	D	H	A	L	L	A	E	A	I	S	N	A	N	A	C	G	A	M	A	V	T	A	K	G	A	M	T	A	L	P	F	P	D	Q	L	N	T	F
Template Known Secondary structure					T	T													S			T	T														T	T	S	S	S																							S	S	S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
	227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.

	303	.
Predicted Secondary structure
Query SS confidence
Query Sequence	M	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	L	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	307	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions