 |
Job Description | P36661 | Confidence | 6.40% | Date | Thu Jan 5 11:53:33 GMT 2012 |
Rank | 55 | Aligned Residues | 66 |
% Identity | 21% | Template | c1x55A_ |
PDB info |
PDB header:ligase | Chain: A: PDB Molecule:asparaginyl-trna synthetase; |
PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue
|
Resolution | 1.80 Å |
|
 |
  |   |
282 | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | |
|
310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |
|
|
|
|
|  |  | . | . |  |  |
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | Q | S | S | L | M | S | W | S | F | L | F | F | K | K | Q | F | I | D | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
C | L | N | N | E | K | C | I | . |
. |
L | H | L | P | E | F | I | F | N | D | N | K | N | L | L | A | L | D | T | D | T | S | D | R | I | K | A | V | K | N | F | L | V | V | L | S | D | S | I | C | S |
Query Conservation |   |
|
|
|   |
|
|
|   |   |   |
|
|
|
|
|
|   |
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
| . | . |
|   |   |
|
|   |
|
|
|
|
|
|
|   |
|
|
|
|
|
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|   |   |
|
|
|
|   |
|
|   |
|
|   |
|   |   |
|
|
|
|
|   |   |   |
|
|   |
|   |   |   |
|   |
|
|   |
|
|
|
|   |
|
| . | . |   |
|   |   |   | . |   |   |   |   |
|   |
|   |   |   |
|   |
|
|   |   |
|   |   |   |   |   |   |
Template Sequence |   |
D | K | Y | A | Y | L | S | Q | S | A | Q | L | Y | L | E | A | A | I | F | G | L | E | K | V | W | S | L | T | P | S | F | R | A | E | K | S | R | T | R | R | H | L | T | E | F | W | H | L | E | . |
. |
L | E | A | A | W | . |
M | D | L | W | D | I | M | K | V | E | E | E | L | V | S | Y | M | V | Q | R | T | L | E |
Template Known Secondary structure |   |
T |  |  |  |  |  |
| S |
| S |  |  |  |  |  |  |  |  |  |  |  | S |  |  |  |  |  |  |  |  |  |
|
|
|
| S |
|
| T | T |
|
| S |  |  |  |  |  |  | . | . |  |  |  |  | T | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  | . | . |  |  |  |  |
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | |
|
. | 230 | . | . | . | |
. | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|