Job Description P77211 Confidence 100.00% Date Thu Jan 5 12:26:21 GMT 2012 Rank 2 Aligned Residues 440 % Identity 44% Template d1wp1a_ SCOP info Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) Resolution 2.56

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.				.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		C	S	L	A	P	D	Y	Q	R	P	A	M	P	V	P	Q	Q	F	S	L	S	Q	N	G	L	V	N	.	.	.	A	A	D	N	Y	Q	N	A	G	W	R	T	F	F	V	D	N	Q	V	K	T	L	I	S	E	A	L	V	N	N	R	D	L	R	M	A	T	L	K	V	Q	E	A	R	A	Q	Y	R	L	T
Query Conservation																													.	.	.
Alig confidence																													.	.	.
Template Conservation
Template Sequence		C	S	L	I	P	D	Y	Q	R	P	E	A	P	V	A	A	A	Y	P	Q	G	Q	A	Y	G	Q	N	T	G	A	A	A	V	P	A	A	D	I	G	W	R	E	F	F	R	D	P	Q	L	Q	Q	L	I	G	V	A	L	E	N	N	R	D	L	R	V	A	A	L	N	V	E	A	F	R	A	Q	Y	R	I	Q
Template Known Secondary structure															S		S	S				S	T	T							S		S	S		G	G	G	S						B
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.							110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.
Query Sequence		D	A	D	R	Y	P	Q	L	N	G	E	G	S	G	S	.	.	.	.	.	.	W	S	G	N	L	K	G	N	T	A	T	T	R	E	F	S	T	G	L	N	A	S	F	D	L	D	F	F	G	R	L	K	N	M	S	E	A	E	R	Q	N	Y	L	A	T	E	E	A	Q	R	A	V	H	I	L	L	V	S	N
Query Conservation																	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.
Template Conservation
Template Sequence		R	A	D	L	F	P	R	I	G	V	D	G	S	G	T	R	Q	R	L	P	G	D	L	S	T	T	G	S	P	A	I	S	S	Q	Y	G	V	T	L	G	T	T	A	W	E	L	D	L	F	G	R	L	R	S	L	R	D	Q	A	L	E	Q	Y	L	A	T	E	Q	A	Q	R	S	A	Q	T	T	L	V	A	S
Template Known Secondary structure				T	T	S				B				B					B			T	T	T	S	S	S	S	S			B									B								T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	Q	S	Y	F	N	Q	Q	L	A	Y	A	Q	L	Q	I	A	E	E	T	L	R	N	Y	Q	Q	S	Y	A	F	V	E	K	Q	L	L	T	G	S	S	N	V	L	A	L	E	Q	A	R	G	V	I	E	S	T	R	S	D	I	A	K	R	Q	G	E	L	A	Q	A	N	N	A	L	Q	L	L	L	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	T	A	Y	L	T	L	K	A	D	Q	A	Q	L	Q	L	T	K	D	T	L	G	T	Y	Q	K	S	F	D	L	T	Q	R	S	Y	D	V	G	V	A	S	A	L	D	L	R	Q	A	Q	T	A	V	E	G	A	R	A	T	L	A	Q	Y	T	R	L	V	A	Q	D	Q	N	A	L	V	L	L	L	G	S
Template Known Secondary structure																																							T	T		S																																						T	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	K	L	P	Q	A	Q	T	V	N	S	D	S	L	Q	S	V	K	L	P	A	G	L	S	S	Q	I	L	L	Q	R	P	D	I	M	E	A	E	H	A	L	M	A	A	N	A	N	I	G	A	A	R	A	A	F	F	P	S	I	S	L	T	S	G	I	S	T	A	S	S	D	L	S	S	L	F	N	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	P	A	N	L	P	Q	G	L	G	L	D	Q	T	L	L	T	E	V	P	A	G	L	P	S	D	L	L	Q	R	R	P	D	I	L	E	A	E	H	Q	L	M	A	A	N	A	S	I	G	A	A	R	A	A	F	F	P	S	I	S	L	T	A	N	A	G	T	M	S	R	Q	L	S	G	L	F	D	A	G
Template Known Secondary structure					S	S							T	T	S			B								T	T																													T	T	S														S	S	G	G	G	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	M	W	N	F	I	P	K	I	E	I	P	I	F	N	A	G	R	N	Q	A	N	L	D	I	A	E	I	R	Q	Q	Q	S	V	V	N	Y	E	Q	K	I	Q	N	A	F	K	E	V	A	D	A	L	A	L	R	Q	S	L	N	D	Q	I	S	A	Q	Q	R	Y	L	A	S	L	Q	I	T	L	Q	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	G	S	W	L	F	Q	P	S	I	N	L	P	I	F	T	A	G	S	L	R	A	S	L	D	Y	A	K	I	Q	K	D	I	N	V	A	Q	Y	E	K	A	I	Q	T	A	F	Q	E	V	A	D	G	L	A	A	R	G	T	F	T	E	Q	L	Q	A	Q	R	D	L	V	K	A	S	D	E	Y	Y	Q	L	A
Template Known Secondary structure																		S	S																																							T	T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	L	Y	Q	H	G	A	V	S	Y	L	E	V	L	D	A	E	R	S	L	F	A	T	R	Q	T	L	L	D	L	N	Y	A	R	Q	V	N	E	I	S	L	Y	T	A	L	G	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	R	Y	R	T	G	V	D	N	Y	L	T	L	L	D	A	Q	R	S	L	F	T	A	Q	Q	Q	L	I	T	D	R	L	N	Q	L	T	S	E	V	N	L	Y	K	A	L	G	G	G
Template Known Secondary structure							T	T	S	S																																						T		S
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.