Job Description P77211 Confidence 100.00% Date Thu Jan 5 12:26:21 GMT 2012 Rank 3 Aligned Residues 403 % Identity 27% Template c1yc9A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein; PDBTitle: the crystal structure of the outer membrane protein vcec from the2 bacterial pathogen vibrio cholerae at 1.8 resolution Resolution 1.80 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.							.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.
Query Sequence		Y	Q	N	A	G	W	R	T	F	F	V	D	N	Q	V	K	T	L	I	S	E	A	L	V	N	N	R	D	L	R	M	A	T	L	K	V	Q	E	A	R	A	Q	Y	R	L	T	D	A	D	R	Y	P	Q	L	N	G	E	G	S	G	S	W	S	G	.	.	.	.	.	.	N	L	K	G	N	T	A	T	T	R
Query Conservation																																																																		.	.	.	.	.	.
Alig confidence																																																																		.	.	.	.	.	.
Template Conservation
Template Sequence		W	P	S	A	N	W	W	Q	R	Y	Q	D	A	Q	L	N	H	L	I	E	E	A	L	Q	H	S	P	S	L	C	M	A	M	A	R	L	K	G	A	Q	G	F	A	R	Q	A	G	A	I	R	S	F	D	L	G	L	A	A	S	A	T	E	S	K	V	S	E	R	Y	Q	S	A	T	P	P	D	G	W	N	D
Template Known Secondary structure					T	T	G	G	G	G	G															S																							G	G	G	S																S	S	S	S		S	S				S
Template Predicted Secondary structure
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	S	T	G	L	N	A	S	F	D	L	D	F	F	G	R	L	K	N	M	S	E	A	E	R	Q	N	Y	L	A	T	E	E	A	Q	R	A	V	H	I	L	L	V	S	N	V	A	Q	S	Y	F	N	Q	Q	L	A	Y	A	Q	L	Q	I	A	E	E	T	L	R	N	Y	Q	Q	S	Y	A	F	V	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	G	T	L	T	L	N	F	Q	Y	D	F	D	F	W	G	K	N	R	A	A	V	V	A	A	T	S	E	L	A	A	A	E	A	E	S	V	A	A	R	L	M	I	S	T	S	I	A	N	A	Y	A	E	L	A	R	L	Y	A	N	Q	E	T	V	H	A	A	L	Q	V	R	N	K	T	V	E	L	L	E	K
Template Known Secondary structure															T	T	S
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	L	T	G	S	S	N	V	L	A	L	E	Q	A	R	G	V	I	E	S	T	R	S	D	I	A	K	R	Q	G	E	L	A	Q	A	N	N	A	L	Q	L	L	L	G	S	Y	G	K	L	P	Q	A	Q	T	V	N	S	D	S	L	Q	S	V	K	L	P	A	G	L	S	S	Q	I	L	L	Q	R	P	D
Query Conservation
Alig confidence																																																																			.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.
Template Sequence		R	Y	A	N	G	L	E	T	L	G	S	V	S	Q	A	K	A	V	A	A	S	V	E	A	E	L	L	G	I	Q	E	S	I	Q	L	Q	K	N	A	L	A	A	L	V	G	Q	G	P	D	R	A	A	S	I	E	E	P	H	I	T	L	T	S	R	Y	.	.	.	.	.	.	V	G	L	L	G	H	R	A	D
Template Known Secondary structure					T	T	S	S																																					T	T			G	G	G	G	G	G													.	.	.	.	.	.		G	G	G	T	T
Template Predicted Secondary structure																																																																			.	.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.							.	.	290	.	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	M	E	A	E	H	A	L	M	A	A	N	A	N	I	G	A	A	R	A	A	F	F	P	S	I	S	L	T	S	G	I	S	T	A	S	S	D	L	S	S	L	F	N	A	S	S	G	M	W	N	F	I	P	K	I	E	I	P	I	F	N	A	G	R	N	Q	A	N	L	D	I	A	E	I	R	Q	Q	Q	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	A	A	R	W	R	A	E	A	A	A	Q	Q	V	G	I	A	Q	A	Q	F	Y	P	D	V	T	L	S	A	F	I	G	Y	Q	A	F	G	L	D	H	L	F	D	S	G	N	D	A	G	A	I	G	P	A	I	Y	L	P	L	F	T	G	G	R	L	E	G	Q	L	T	S	A	E	A	R	Y	Q	E	A
Template Known Secondary structure																						T	T	S															S	G	G	G	T	T	S	T	T																	T	T
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	N	Y	E	Q	K	I	Q	N	A	F	K	E	V	A	D	A	L	A	L	R	Q	S	L	N	D	Q	I	S	A	Q	Q	R	Y	L	A	S	L	Q	I	T	L	Q	R	A	R	A	L	Y	Q	H	G	A	V	S	Y	L	E	V	L	D	A	E	R	S	L	F	A	T	R	Q	T	L	L	D	L	N	Y	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	Q	Y	N	G	T	L	V	Q	A	L	H	E	I	A	D	V	V	T	S	S	Q	A	L	Q	A	R	I	N	K	T	E	Q	A	V	Q	Q	A	E	Q	A	L	H	I	A	T	N	R	Y	Q	G	G	L	A	T	Y	L	D	V	L	V	A	E	E	S	L	L	N	N	Q	R	A	L	V	N	L	Q	S	R
Template Known Secondary structure																																																				T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	V	N	E	I	S	L	Y	T	A	L	G	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F	S	L	D	L	A	L	I	H	A	L	G	G	G
Template Known Secondary structure														T
Template Predicted Secondary structure
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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