 |
Job Description | P11349 | Confidence | 37.91% | Date | Thu Jan 5 11:32:35 GMT 2012 |
Rank | 73 | Aligned Residues | 65 |
% Identity | 20% | Template | c2d6fC_ |
PDB info |
PDB header:ligase/rna | Chain: C: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit e; |
PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln)
|
Resolution | 3.15 Å |
|
 |
  |   |
406 | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
L | K | R | M | L | A | M | R | H | Y | K | R | A | E | T | V | D | G | K | V | D | T | R | A | L | E | E | V | G | L | T | E | A | Q | A | Q | E | M | Y | R | Y | L | A | I | A | N | Y | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
|   |   |
|   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
|
|   |
|   |   |
|   |   | . | . |
|   |   |
|
|   |
|   |   |
|   |
|
|
|
|   |
|
|
|
|   |
|
|
|   |   |   |   |   |   |   |
|   |   |   |   |
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |
Template Sequence |   |
L | G | T | E | M | A | D | Y | A | . |
. |
K | K | R | G | V | S | G | I | F | H | T | D | E | L | P | A | Y | G | I | T | E | E | E | V | R | G | L | R | D | A | V | G | A | S | Q | G | D | A | V | V | M | V | A | H | E | R | V | T | A | E | N | A | L | R | E | V | I | R | R | A | E | M | A | I | Q | G | V | P | E |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | . | . |  | T | T | S |
| S |
|
|  |  | T | T | T | T | T |
| S | S |
|
|  |  |  |  |  |  |  |  |  |  | T | T |
|
| S | S | S |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  | . | . |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
320 | . | . | . | . | . | . | . | . | |
|
. | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . |
  |
  |   |
453 | . | . | . | . | . | . | 460 | |
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 470 | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | D | R | F | V | V | P | S | . |
. |
. |
. |
. |
. |
S | H | R | E | L | A | R | E | A | F | P | E |
Query Conservation |   |
|   |
|   |
|   |
|   | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |   |   |   |
|   |
|   |   |
|
|   |
|
|   |   |
|
|   |
|
|
|
Template Sequence |   |
E | T | R | K | A | L | P | D | G | N | T | Q | Y | L | R | P | L | P | T | S | S | R | M | Y | L | E |
Template Known Secondary structure |   |
 |  |  |  |  |
| S | S | S |
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
Template Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
398 | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|