Job Description P13035 Confidence 100.00% Date Thu Jan 5 11:33:30 GMT 2012 Rank 12 Aligned Residues 350 % Identity 15% Template c3pvcA_ PDB info PDB header:oxidoreductase, transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of apo mnmc from yersinia pestis Resolution 2.31 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		E	T	K	D	L	I	V	I	G	G	G	I	N	G	A	G	I	A	A	D	A	A	G	R	G	L	S	V	L	M	L	E	A	Q	.	D	L	A	C	A	T	S	S	A	S	S	K	L	I	H	G	G	L	R	Y	L	E	H	Y	E	F	R	L	V	S	E	A	L	A	E	R	E	V	L	L	K	M	A	P	H
Query Conservation																																				.
Alig confidence																																				.
Template Conservation
Template Sequence		R	C	D	D	I	A	I	I	G	G	G	I	V	S	A	L	T	A	L	A	L	Q	R	R	G	A	V	V	T	L	Y	C	A	D	A	Q	P	A	Q	G	A	S	G	N	R	Q	G	A	L	Y	P	L	L	N	G	K	N	D	A	L	E	T	F	F	T	S	A	F	T	F	A	R	R	Q	Y	D	Q	L	L	E
Template Known Secondary structure				S	S							S												T	T	T								S	S	S	S	T	T		S	G	G	G		S										S	S		S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		81						.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.
Query SS confidence			.	.	.	.	.
Query Sequence		I	.	.	.	.	.	A	F	P	M	R	F	R	L	P	H	R	P	H	L	R	P	A	W	M	I	R	I	G	L	F	M	Y	D	H	L	G	K	R	T	S	L	P	G	S	T	G	L	R	F	G	A	N	S	V	L	K	P	E	I	K	R	G	F	E	Y	S	D	C	W	V	D	D	A	R	L	V	L	A	N
Query Conservation			.	.	.	.	.
Alig confidence			.	.	.	.	.																							.	.	.	.
Template Conservation																														.	.	.	.
Template Sequence		Q	G	I	A	F	D	H	Q	W	C	G	V	S	Q	L	A	F	D	D	K	S	R	G	K	I	E	K	X	.	.	.	.	L	H	T	Q	W	P	V	E	F	A	E	A	X	S	R	E	Q	L	S	E	L	A	G	L	D	C	A	H	D	G	I	H	Y	P	A	G	G	W	L	C	P	S	D	L	T	H	A	L
Template Known Secondary structure		T	T																S											.	.	.	.	T	T	S				T	T	T														S	S			S	S						T	T
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370					.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	M	V	V	R	K	G	G	E	V	L	T	R	T	R	A	T	S	A	R	R	E	N	G	L	W	I	V	E	A	E	D	I	D	T	G	K	K	Y	S	W	Q	A	R	G	L	V	N	A	T	G	P	W	V	K	Q	F	F	D	D	G	M	H	L	P	S	P	Y	G	I	R	L	I	K	G	S	H	I	V
Query Conservation
Alig confidence																																						.	.	.	.	.																							.	.	.	.	.
Template Conservation																																						.	.	.	.	.																							.	.	.	.	.
Template Sequence		X	X	L	A	Q	Q	N	G	X	T	C	H	Y	Q	H	E	L	Q	R	L	K	R	I	D	S	Q	W	Q	L	T	F	G	S	Q	A	A	.	.	.	.	.	K	H	H	A	T	V	I	L	A	T	G	H	R	L	P	E	W	E	Q	T	H	H	.	.	.	.	.	L	P	L	S	A	V	R	G	Q	V	S	H
Template Known Secondary structure								T	T						S										S	S	S											.	.	.	.	.				S							G	G	G	T	T		S	T	T	T	T	T	.	.	.	.	.	S
Template Predicted Secondary structure																																						.	.	.	.	.																							.	.	.	.	.
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.						.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.						.	.	.	480	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.						.	.	.	.	310
Predicted Secondary structure																																																																								.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.
Query Sequence		V	P	R	V	H	T	Q	K	Q	A	Y	I	L	Q	N	E	D	K	R	I	V	F	V	I	P	W	M	D	E	F	S	I	I	G	T	T	D	V	E	Y	K	G	D	P	K	A	V	K	I	E	E	S	E	I	N	Y	L	L	N	V	Y	N	T	H	F	K	K	Q	L	S	.	.	.	.	.	R	D	D	I	V
Query Conservation																																																																								.	.	.	.	.
Alig confidence																				.																		.	.	.																												.				.	.	.	.	.
Template Conservation																				.																		.	.	.																												.
Template Sequence		I	P	T	T	P	V	L	S	Q	L	Q	Q	V	L	C	Y	D	G	.	Y	L	T	P	V	N	P	A	N	Q	H	H	C	I	G	A	S	.	.	.	Y	Q	R	G	D	I	A	T	D	F	R	L	T	E	Q	Q	E	N	R	E	R	L	L	R	C	L	P	.	Q	V	S	W	P	Q	Q	V	D	V	S	D	N
Template Known Secondary structure						T	T	G	G	G			S				S	S	S	.						B	T	T	T	T								.	.	.				T	B																						T	.	T		S	G	G	G	G				T	T
Template Predicted Secondary structure																				.																		.	.	.																												.
Template SS confidence
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.		.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.				.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.		.	.	.	.	.	.	.	.	560	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.													.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.				.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query Sequence		W	T	Y	S	G	V	R	P	L	C	D	D	E	S	D	S	P	Q	A	I	T	R	D	.	.	.	.	.	.	.	.	.	.	.	.	Y	T	L	D	I	H	D	E	N	G	K	A	P	L	L	S	V	F	G	G	K	.	.	.	L	T	T	Y	R	K	L	A	E	H	A	L	E	K	L	T
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation
Template Sequence		Q	A	R	C	G	V	R	C	A	I	R	D	H	L	P	X	V	G	A	V	P	D	Y	A	A	T	L	A	Q	Y	Q	D	L	S	R	R	I	N	D	I	A	V	A	P	V	W	P	E	L	F	X	V	G	G	L	G	S	R	G	L	C	S	A	P	L	V	A	E	I	L	A	A	Q	X	F
Template Known Secondary structure												T	T	S																	S	T	T																								T	T																		T
Template Predicted Secondary structure
Template SS confidence
		565	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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