Job Description P13035 Confidence 100.00% Date Thu Jan 5 11:33:30 GMT 2012 Rank 11 Aligned Residues 344 % Identity 17% Template c3nyeA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:d-arginine dehydrogenase; PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine Resolution 1.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		E	T	K	D	L	I	V	I	G	G	G	I	N	G	A	G	I	A	A	D	A	A	G	R	G	L	S	V	L	M	L	E	A	Q	D	L	A	C	A	T	S	S	A	S	S	K	L	I	H	G	G	L	R	Y	L	E	H	Y	E	F	R	L	V	S	E	A	L	A	E	R	E	V	L	L	.	K	M	A	P	H
Query Conservation																																																																												.
Alig confidence																																																					.	.																						.
Template Conservation																																																					.	.
Template Sequence		I	E	A	D	Y	L	V	I	G	A	G	I	A	G	A	S	T	G	Y	W	L	S	A	H	G	R	V	V	V	L	E	R	E	A	Q	P	G	Y	H	S	T	G	R	S	A	A	H	Y	T	V	A	.	.	Y	G	T	P	Q	V	R	A	L	T	A	A	S	R	A	F	F	D	N	P	P	A	G	F	C	E	H
Template Known Secondary structure												S											T	T	T	S							S	S	S	S	T	T	S	S	G	G	G	S	S						S	S	.	.		S	S																S			T	T	S		S	S
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		1002	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.			.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	F	P	M	R	F	R	L	P	H	R	P	H	L	R	P	A	W	M	I	R	I	G	L	F	M	Y	D	H	L	G	K	R	T	S	L	P	G	S	T	G	L	R	F	G	A	N	S	V	L	K	P	E	I	K	R	G	F	E	Y	S	D	C	W	V	D	D	A	R	L	V	L	A	N	A	Q	M	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	L	L	S	P	R	P	E	M	V	V	D	F	S	D	D	P	E	E	L	R	R	Q	Y	E	S	G	K	A	L	V	P	Q	M	R	L	L	D	A	E	Q	A	C	S	I	V	P	V	L	R	R	D	K	V	F	G	A	T	Y	D	P	T	G	A	D	I	D	T	D	A	L	H	Q	G	Y	L	R	G	I	R
Template Known Secondary structure			S											S	S																		T	T													S	T	T	B		G	G	G								T	T
Template Predicted Secondary structure
Template SS confidence
		1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	G	G	E	V	L	T	R	T	R	A	T	S	A	R	R	E	N	G	L	W	I	V	E	A	E	D	I	D	T	G	K	K	Y	S	W	Q	A	R	G	L	V	N	A	T	G	P	W	V	K	Q	F	F	D	D	G	M	H	L	P	S	P	Y	G	I	R	L	I	K	G	S	H	I	V	V	P	R	V	H
Query Conservation
Alig confidence																												.	.	.	.	.	.																												.	.
Template Conservation																												.	.	.	.	.	.																												.	.
Template Sequence		R	N	Q	G	Q	V	L	C	N	H	E	A	L	E	I	R	R	V	D	G	A	W	E	V	R	C	.	.	.	.	.	.	D	A	G	S	Y	R	A	A	V	L	V	N	A	A	G	A	W	C	D	A	I	A	G	L	A	G	V	.	.	R	P	L	G	L	Q	P	K	R	R	S	A	F	I	F	A	P	P	P
Template Known Secondary structure			T	T					S	S										T	T							.	.	.	.	.	.	S	S													G	G	G									T		.	.																			T
Template Predicted Secondary structure																												.	.	.	.	.	.																												.	.
Template SS confidence
		1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.							.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.			.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	K	Q	A	Y	I	L	Q	N	E	D	K	R	I	V	F	V	I	P	W	M	D	E	F	S	I	I	G	T	T	D	V	E	Y	K	G	D	P	K	A	V	K	I	E	E	S	E	I	N	Y	L	L	N	V	Y	N	T	H	F	K	K	Q	L	S	R	D	D	I	V	W	T	Y	S	G	V	R	P	L	C
Query Conservation
Alig confidence																																										.	.																				.
Template Conservation																																										.	.																				.
Template Sequence		G	I	D	C	H	D	W	P	M	L	V	S	L	D	E	S	F	Y	L	K	P	D	A	G	M	L	L	G	S	P	A	N	A	D	P	V	E	A	H	D	.	.	V	Q	P	E	Q	L	D	I	A	T	G	M	Y	L	I	E	E	A	T	.	T	L	T	I	R	R	P	E	H	T	W	A	G	L	R	S	F	V
Template Known Secondary structure		T				T	T							T	T	S	S							T	T														S	S		.	.																			B	.	S							S
Template Predicted Secondary structure																																										.	.																				.
Template SS confidence
		1232	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.			.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290		.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.				.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		D	D	E	S	D	S	P	Q	A	I	T	R	D	Y	T	L	D	I	H	D	E	N	G	K	A	P	L	L	S	V	F	G	G	.	.	.	K	L	T	T	Y	R	K	L	A	E	H	A	L	E	K	L
Query Conservation																																			.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	G	D	.	.	.	.	.	.	.	.	.	.	.	L	V	A	G	Y	A	A	N	A	E	G	F	F	W	V	A	A	Q	G	G	Y	G	I	Q	T	S	A	A	M	G	E	A	S	A	A	L	I
Template Known Secondary structure		T	T	S		.	.	.	.	.	.	.	.	.	.	.							T	T	S	T	T								T	T		T	T	T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1309	1310	.	.												.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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