Job Description P13035 Confidence 99.66% Date Thu Jan 5 11:33:30 GMT 2012 Rank 45 Aligned Residues 352 % Identity 13% Template c3i6dA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: crystal structure of ppo from bacillus subtilis with af Resolution 2.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.							.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																									.	.	.	.	.	.																.	.																																.	.	.
Query SS confidence																									.	.	.	.	.	.																.	.																																.	.	.
Query Sequence		T	K	D	L	I	V	I	G	G	G	I	N	G	A	G	I	A	A	D	A	A	G	R	.	.	.	.	.	.	G	L	S	V	L	M	L	E	A	Q	D	L	A	C	A	.	.	T	S	S	A	S	S	K	L	I	H	G	G	L	R	Y	L	E	H	Y	E	F	R	L	V	S	E	A	L	A	E	R	.	.	.
Query Conservation																									.	.	.	.	.	.																.	.																																.	.	.
Alig confidence																									.	.	.	.	.	.																.	.																																.	.	.
Template Conservation
Template Sequence		K	K	H	V	V	I	I	G	G	G	I	T	G	L	A	A	A	F	Y	M	E	K	E	I	K	E	K	N	L	P	L	E	L	T	L	V	E	A	S	P	R	V	G	G	K	I	Q	T	V	K	K	D	G	Y	I	I	E	R	G	P	D	S	F	L	E	R	K	K	S	A	P	Q	L	V	K	D	L	G	L	E
Template Known Secondary structure											S															T	T	T	T		S								S	S	S	S	S		T	T							T	T					S	S						T	T		T									T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
																													72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	L	L	K	M	A	P	H	I	A	F	P	M	R	F	R	L	P	H	R	P	H	L	R	P	A	W	M	I	R	I	G	L	F	M	Y	D	H	L	G	K	R	T	S	L	P	G	S	T	G	L	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	L	L	V	N	N	A	T	G	Q	S	Y	V	L	V	N	R	T	L	H	P	M	P	K	S	G	K	A	R	A	A	M	D	F	I	L	P	A	S	K	T	K	D	D	Q	S	L	G	E	F	F	R	R	R	V	G	D	E	V	V	E	N	L	I	E	P	L	L	S	G	I	Y	A	G	D	I	D	K	L	S
Template Known Secondary structure		T	T														S	S										S									S				S	S	S	S			B									S								T								T	T		S		T	T	T	B	B
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	A	N	S	V	L	K	P	E	I	K	R	G	F	E	Y	S	D	C	W	V	D	D	A	R	L	V	L	A	N	A	Q	M	V	V	R	K	G	G	E	V	L	T	R	T	R	A	T	S	A	R	R	E	N	G	L	W	I	V	E	A	E	D	I	D	T	G	K	K	Y	S	W	Q	A	R	G	L	V	N
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.																																																.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.																																																.	.	.	.	.
Template Sequence		L	M	S	T	F	P	Q	F	Y	Q	F	.	.	.	.	.	.	.	.	Q	T	L	S	T	G	L	Q	T	L	V	E	E	I	E	K	Q	L	K	L	T	K	V	Y	K	G	T	K	V	T	K	L	S	H	S	G	S	C	Y	S	L	E	L	D	N	G	V	.	.	.	.	.	T	L	D	A	D	S	V	I	V
Template Known Secondary structure							G	G	G				.	.	.	.	.	.	.	.				T	T		T										T			S						S										S	S	S						S	S	S		.	.	.	.	.					S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.																																																.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.									.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.						.	.	.	.	.	.	250	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.						.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.						240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.									.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.																		.	.	.	.	.																							.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.																		.	.	.	.	.																							.	.	.	.	.	.	.	.
Query Sequence		A	T	G	P	W	V	K	Q	F	F	D	D	G	M	H	L	P	S	.	.	.	.	.	P	Y	G	I	R	L	I	K	G	S	H	I	V	V	P	R	V	.	.	.	.	.	H	T	Q	K	Q	A	Y	I	L	Q	N	E	D	K	R	I	V	F	V	I	P	W	.	.	.	.	.	.	.	.	M	D	E	F	S
Query Conservation																				.	.	.	.	.																		.	.	.	.	.																							.	.	.	.	.	.	.	.
Alig confidence								.	.											.	.	.	.	.																		.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Conservation								.	.
Template Sequence		T	A	P	H	K	A	.	.	A	A	G	M	L	S	E	L	P	A	I	S	H	L	K	N	M	H	S	T	S	V	A	N	V	A	L	G	F	P	E	G	S	V	Q	M	E	H	E	G	T	G	F	V	I	S	R	N	S	D	F	A	I	T	A	C	T	W	T	N	K	K	W	P	H	A	A	P	E	G	K	T
Template Known Secondary structure			S					.	.					T	T	T	S	T	T						T														S	S	T	T				S	S		S	S						S	T	T			S												G	G	G	S		T	T
Template Predicted Secondary structure								.	.
Template SS confidence
		284	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		I	I	G	T	T	D	V	E	Y	K	G	D	P	K	A	V	K	I	E	E	S	E	I	N	Y	L	L	N	V	Y	N	T	H	F	K	K	Q	L	S	R	D	D	I	.	V	W	T	Y	S	G	V	R	P	L	C	D	D	E	S	D	S	P	Q	A	I	T	R	D	Y	T	L	D	I	H	D	E	N	G	K	A
Query Conservation																																													.
Alig confidence																																													.																											.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.
Template Sequence		L	L	R	A	Y	V	G	K	A	G	D	E	S	I	V	D	L	S	D	N	D	I	I	N	I	V	L	E	D	L	K	K	V	M	N	I	N	G	E	P	E	M	T	C	V	T	R	W	H	E	S	M	P	Q	Y	H	V	G	H	K	Q	R	I	K	E	L	R	E	A	L	.	.	.	.	.	A	S	A	Y	P
Template Known Secondary structure										S	S			G	G	G	T	S														G	G	G	S				S			S															B	T	T													.	.	.	.	.				S	T
Template Predicted Secondary structure																																																																								.	.	.	.	.
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.						.	.	.	.	.
		346	.	.	.	350	.					.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence		P	L	L	S	V	F	.	.	.	.	G	G	K	L	T	T	Y	R	K	L	A	E	H	A	L	E	K	L	T	P	Y	Y	Q
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.
Template Conservation
Template Sequence		G	V	Y	M	T	G	A	S	F	E	G	V	G	I	P	D	C	I	D	Q	G	K	A	A	V	S	D	A	L	T	Y	L	F
Template Known Secondary structure		T					S	T	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions