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Job DescriptionP13035
Confidence99.50%DateThu Jan 5 11:33:30 GMT 2012
Rank71Aligned Residues155
% Identity20%Templatec3cesB_
PDB info PDB header:rna binding proteinChain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme PDBTitle: crystal structure of e.coli mnmg (gida), a highly-conserved trna2 modifying enzyme
Resolution2.41 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  ETKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHI
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Template Sequence  DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIG. . . . . . . . . . . KGHLVKEVDALGGLMAKA
Template Known Secondary structure  S

S

STT

S
GGGTT

SS
S
TT...........TT
S
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   5....10.........20.........30.........40.........50..... ....60.........70...
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  AFPMRFRLPHRPHLRPAWMIRIGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVVR
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Template Sequence  IDQAGIQFR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ILNASKGPAVRATRAQADRVLYRQAVRTALEN
Template Known Secondary structure  .......................................STTS
TTS

T
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   74.....80.. .......90.........100.........110....
 
   162.......170.........180.........190.........200.........210
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Query Sequence  KGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWV
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Template Sequence  QPNLMIFQQAVEDLIVENDRVVGAVT. . . . QMGLKFRAKAVVLTVGTFL
Template Known Secondary structure 
TT

SSSB....TTS
S

SGGG
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   115....120.........130.........140 .........150.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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