Phyre 2 alignment of P13035 with c3c4aA

Job Description P13035
Confidence 98.91% Date Thu Jan 5 11:33:30 GMT 2012

Rank 187 Aligned Residues 292

% Identity 14% Template c3c4aA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:probable tryptophan hydroxylase viod; PDBTitle: crystal structure of viod hydroxylase in complex with fad2 from chromobacterium violaceum. northeast structural3 genomics consortium target cvr158

Resolution 2.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence	L	I	V	I	G	G	G	I	N	G	A	G	I	A	A	D	A	A	G	R	.	.	G	L	S	V	L	M	L	E	A	Q	D	L	A	C	A	T	S	S	A	S	S	K	L	I	H	G	G	L	R	Y	L	E	H	Y	E	F	R	L	V	S	E	A	L	A	E	R	E	V	L	L	K	M	A	P	H	I	A	F
Query Conservation																					.	.
Alig confidence																					.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	I	L	V	I	G	A	G	P	A	G	L	V	F	A	S	Q	L	K	Q	A	R	P	L	W	A	I	D	I	V	E	K	N	D	E	Q	E	V	L	G	W	G	V	V	L	P	G	R	P	G	Q	H	P	A	N	P	L	S	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	P	E	R	L	N	P
Template Known Secondary structure							S															T	T	S							S	S		T	T					S						S		T	T	T		T	T		G	G	G	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	S		G	G	G	G
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.														.	.	.	.	.	.	.	.

	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	M	R	F	R	L	P	H	R	P	H	L	R	P	A	W	M	I	R	I	G	L	F	M	Y	D	H	L	G	K	R	T	S	L	P	G	S	T	G	L	R	F	G	A	N	S	V	L	K	P	E	I	K	R	G	F	E	Y	S	D	C	W	V	D	D	A	R	L	V	L	A	N	A	Q	M	V	V	R	K	G
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	Q	F	L	E	D	F	K	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	H	N	E	P	S	L	X	S	T	G	V	L	L	C	G	V	E	R	R	G	L	V	H	A	L	R	D	K	C	R	S	Q	G
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S								S																					T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	70	.	.	.	.	.	.	.	.																																						.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.

	164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	E	V	L	T	R	T	R	A	T	S	A	R	R	E	N	G	L	W	I	V	E	A	E	D	I	D	T	G	K	K	Y	S	W	Q	A	R	G	L	V	N	A	T	G	P	W	V	K	Q	F	F	D	D	G	M	H	L	P	S	P	Y	G	I	R	L	I	K	G	S	H	I	V	V	P	R	V	H	T	Q	K
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Sequence	I	A	I	R	F	E	S	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	H	G	E	L	P	L	A	D	Y	D	L	V	V	L	A	N	G	V	N	H	K	.	T	A	H	F	T	E	A	L	V	P	Q	V	D	Y	G	R	N	K	Y	I	W	Y	G	T	S	Q	L	F	D	Q	X
Template Known Secondary structure					T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	G	G	G			G	G	G		S							G	G	G	G	G	.	T			S	S	G	G	G																	S	S			S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template SS confidence
	113	.	.	.	.	.	.	120	.																	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.

	244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence	Q	A	Y	I	L	Q	N	E	D	K	R	I	V	F	V	I	.	.	P	W	M	D	E	F	S	I	I	G	T	T	D	V	E	Y	K	G	D	P	K	A	V	K	I	E	E	S	E	I	N	Y	L	L	N	V	Y	N	T	H	F	K	K	Q	L	S	R	D	D	I	V	W	T	Y	S	G	V	R	P	L	C	D
Query Conservation																	.	.
Alig confidence																	.	.																																												.	.
Template Conservation																																																														.	.
Template Sequence	N	L	V	F	R	T	H	G	K	D	I	F	I	A	H	A	Y	K	Y	S	D	T	X	S	T	F	I	V	E	C	S	E	E	T	Y	A	R	A	R	L	G	E	X	S	E	E	A	S	A	E	Y	V	A	K	V	F	Q	A	E	L	G	.	.	G	H	G	L	V	S	Q	P	G	L	G	W	R	N	F	X	T
Template Known Secondary structure								T	T											S	S	S																T	T	S	S	S	S													T					T	.	.	T				B			T	T	T		S
Template Predicted Secondary structure																																																														.	.
Template SS confidence
	176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

	322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	E	S	D	S	P	Q	A	I	T	R	D	Y	T	L	D	I	H	D	E	N	G	K	A	P	L	L	S	V	F	G	G	K	L	T	T	Y	R	K	L	A	E	H	A	L	E	K	L	T	P
Query Conservation
Alig confidence				.	.	.																										.	.
Template Conservation				.	.	.																										.	.
Template Sequence	L	S	H	.	.	.	D	R	C	H	D	G	K	L	V	L	L	G	D	A	L	Q	S	G	H	F	S	I	G	H	G	.	.	T	T	X	A	V	V	V	A	Q	L	L	V	K	A	L	C	T
Template Known Secondary structure				.	.	.	S		S			T	T					G	G	G	T					G	G	G				.	.
Template Predicted Secondary structure				.	.	.																										.	.
Template SS confidence
	254	.	.				.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.			.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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