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Job DescriptionP13035
Confidence100.00%DateThu Jan 5 11:33:30 GMT 2012
Rank1Aligned Residues493
% Identity99%Templatec2r4jA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:aerobic glycerol-3-phosphate dehydrogenase; PDBTitle: crystal structure of escherichia coli semet substituted2 glycerol-3-phosphate dehydrogenase in complex with dhap
Resolution1.96 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPH
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Template Sequence  METKDLIVIGGGINGAGIAADAAGRGLSVLXLEAQDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKXAPH
Template Known Secondary structure 



STTT


SSSTT
SGGGSS




GGGGGGT

TT
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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  IAFPMRFRLPHRPHLRPAWMIRIGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVV
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Template Conservation                                                          
      
 
 
  
  

   
 
Template Sequence  IAFPXRFRLPHRPHLRPAWMIRIGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQXVV
Template Known Secondary structure  T

TTTS
SS

SSS




TTSSB
TT


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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  RKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSPYGIRLIKGSHIVVPRVH
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Template Sequence  RKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGXHLPSPYGIRLIKGSHIVVPRVH
Template Known Secondary structure  TT

STTTTT



GGGTT



SS

S
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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   241........250.........260.........270.........280.........290.........300.........310.........320
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Query Sequence  TQKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYKGDPKAVKIEESEINYLLNVYNTHFKKQLSRDDIVWTYSGVRPLC
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Template Conservation                     
   
  


 
         
       
  

       
  
    
    




  
Template Sequence  TQKQAYILQNEDKRIVFVIPWXDEFSIIGTTDVEYKGDPKAVKIEESEINYLLNVYNTHFKKQLSRDDIVWTYSGVRPLC
Template Known Secondary structure  S
S

TTS
TTT




S
GGG



TTBSS


GGG

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   241........250.........260.........270.........280.........290.........300.........310.........320
 
   321........330.........340.........350.........360.........370.........380.........390.........400
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Query Sequence  DDESDSPQAITRDYTLDIHDENGKAPLLSVFGGKLTTYRKLAEHALEKLTPYYQGIGPAWTKESVLPGGAIEGDRDDYAA
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Template Conservation   
         
   
          
  
 


 

 
  

   
                                 
Template Sequence  DDESDSPQAITRDYTLDIHDENGKAPLLSVFGGKLTTYRKLAEHALEKLTPYYQGIGPAWTKESVLPGGAIEGDRDDYAA
Template Known Secondary structure 



SSGGGS




SSS
S



STTGGG
SS




GGG


TT


SS
S
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   321........330.........340.........350.........360.........370.........380.........390.........400
 
   401........410.........420.........430.........440.........450.........460.........470.........480
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Query Sequence  RLRRRYPFLTESLARHYARTYGSNSELLLGNAGTVSDLGEDFGHEFYEAELKYLVDHEWVRRADDALWRRTKQGMWLNAD
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Template Conservation                  
   

     
                    


  

  
 
    
 
 



 
      
Template Sequence  RLRRRYPFLTESLARHYARTYGSNSELLLGNAGTVSDLGEDFGHEFYEAELKYLVDHEWVRRADDALWRRTKQGXWLNAD
Template Known Secondary structure  STTS
TGGGTT

SGGGG

B
STT
BS


STS

GGGT

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   401........410.........420.........430.........440.........450.........460.........470.........480
 
   481........490...
Predicted Secondary structure 
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Query Sequence  QQSRVSQWLVEYT
Query Conservation          
    
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Template Conservation               
Template Sequence  QQSRVSQWLVEYT
Template Known Secondary structure  T
Template Predicted Secondary structure 
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   481........490...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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