Job Description P13035 Confidence 99.34% Date Thu Jan 5 11:33:30 GMT 2012 Rank 114 Aligned Residues 206 % Identity 19% Template c2jbvA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:choline oxidase; PDBTitle: crystal structure of choline oxidase reveals insights into2 the catalytic mechanism Resolution 1.86 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.																																								.	.	.	.	40	.
Predicted Secondary structure																									.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	T	K	D	L	I	V	I	G	G	G	I	N	G	A	G	I	A	A	D	A	A	G	.	R	G	L	S	V	L	M	L	E	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	A	C	A	T
Query Conservation																									.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	E	F	D	Y	I	V	V	G	G	G	S	A	G	A	A	V	A	A	R	L	S	E	D	P	A	V	S	V	A	L	V	E	A	G	P	D	D	R	G	V	P	E	V	L	Q	L	D	R	W	M	E	L	L	E	S	G	Y	D	W	D	Y	P	I	E	P	Q	E	N	G	N	S	F	M	R	H	A	R	A	K
Template Known Secondary structure												S											T	T	S	T	T	S							S	S				T	T						B	G	G	G	G	G	G	G	T	T	S	T	T	B					B				S	S	S		T	T						B
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.												.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	S	A	S	S	K	L	I	H	G	G	L	R	Y	L	E	H	Y	E	F	R	L	V	S	E	A	L	.	.	.	.	.	A	E	R	E	V	L	L	K	M	A	P	H	I	A	F	P	M	R	F	R	.	.	.	.	.	.	.	.	.	.	.	L	P	H	R	P	H	L	R	P	A	W	M	I	R	I	G	L
Query Conservation																													.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	M	G	G	C	S	S	H	N	S	C	I	A	F	W	A	P	R	E	D	L	D	E	W	E	A	K	Y	G	A	T	G	W	N	A	E	A	A	W	P	L	Y	K	R	L	E	T	N	E	D	A	G	P	D	A	P	H	H	G	D	S	G	P	V	H	L	M	N	V	P	P	K	D	P	T	G	V	A	L	L
Template Known Secondary structure		S	T	T	G	G	G	G	T	S			B															T	T			T	T		S															T	T		B	T	T	B	T	T	S		B	S		S								S
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.						150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																																														.	.	.	.	.
Query SS confidence																																														.	.	.	.	.
Query Sequence		F	M	Y	D	H	L	G	K	R	T	S	L	P	G	S	T	G	L	R	F	G	A	N	S	V	L	K	P	E	I	K	R	G	F	E	Y	S	D	C	W	V	D	D	A	.	.	.	.	.	R	L	V	L	A	N	A	Q	M	V	V	R	K	G	G	E	V	L	T	R	T	R	A	T	S	A	R	R	E	N	G
Query Conservation																																														.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	C	E	Q	A	G	I	P	R	A	K	F	N	.	.	.	.	.	.	.	.	.	.	.	T	G	T	T	V	V	N	G	A	N	F	F	Q	I	N	R	R	A	D	G	T	R	S	S	S	S	V	S	Y	I	H	P	I	V	E	Q	E	N	F	T	L	L	T	G	L	R	A	R	Q	L	V	F	D	A	D
Template Known Secondary structure							T	T			B			S	S	.	.	.	.	.	.	.	.	.	.	.	S	S	S			S	S									B		T	T	S	B	B								T	G	G	G	T	T		T	T						S										T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.												.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
				181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																						.								.
Query SS confidence		.	.																						.								.
Query Sequence		.	.	L	W	I	V	E	A	E	D	I	D	T	G	K	K	Y	S	W	Q	A	R	G	.	L	V	N	A	T	G	P	.	W	V	K	Q	F	F	D	D	G	M
Query Conservation		.	.																						.								.
Alig confidence		.	.																						.								.
Template Conservation
Template Sequence		R	R	C	T	G	V	D	I	V	D	S	A	F	G	H	T	H	R	L	T	A	R	N	E	V	V	L	S	T	G	A	I	D	T	P	K	L	L	M	L	S	G
Template Known Secondary structure		S	B								S	S	T	T	S															S												T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions