Job Description P13035 Confidence 99.42% Date Thu Jan 5 11:33:30 GMT 2012 Rank 85 Aligned Residues 206 % Identity 15% Template c1gndA_ PDB info PDB header:gtpase activation Chain: A: PDB Molecule:guanine nucleotide dissociation inhibitor; PDBTitle: guanine nucleotide dissociation inhibitor, alpha-isoform Resolution 1.81 Å

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		1	.	.		.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure					.																																						.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.																																						.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	E	T	.	K	D	L	I	V	I	G	G	G	I	N	G	A	G	I	A	A	D	A	A	G	R	G	L	S	V	L	M	L	E	A	Q	D	L	A	C	A	.	.	T	S	S	A	S	S	K	L	I	H	G	G	L	R	Y	L	E	H	Y	E	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation					.																																						.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																																						.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	D	E	E	Y	D	V	I	V	L	G	T	G	L	T	E	C	I	L	S	G	I	M	S	V	N	G	K	K	V	L	H	M	D	R	N	P	Y	Y	G	G	E	S	S	S	I	T	P	L	E	E	L	Y	K	R	F	Q	L	L	E	G	P	P	E	T	M	G	R	G	R	D	W	N	V	D	L	I	P	K	F
Template Known Secondary structure				S	B		S							S													T	T								S	S	S	S	S		T	T	S					S								T	T			S				G	G	G			G	G	G					S	S			B
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
																																																							62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	V	S	E	A	L	A	E	R	E	V	L	L	K	M	A	P	H	I	A	F	P	M	R	F	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	M	A	N	G	Q	L	V	K	M	L	L	Y	T	E	V	T	R	Y	L	D	F	K	V	V	E	G	S	F	V	Y	K	G	G	K	I	Y	K	V	P	S	T	E	T	E	A	L	A	S	N	L	M	G	M	F	E	K	R	R	F	R	K	F	L	V	F	V	A	N	F	D	E	N	D	P	K	T	F	E	G
Template Known Secondary structure				T	T	S										T	G	G	G	S														T	T								S								S	S	S																				T	T		G	G	G	S		S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.												.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																	.	.																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	P	H	R	P	H	L	R	P	A	W	M	I	R	I	.	.	G	L	F	M	Y	D	H	L	G	K	R	T	S	L	P	G	S	T	G	L	R	F	G	.	.	.	.	.	.	.	.	.	.	.	A	N	S	V	L	K	P	E	I	K	R	G	F	E	Y	S	D	C	W	V	D	D	A	R	L	V	L	A	N
Query Conservation																	.	.																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.																								.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation																																																																							.	.
Template Sequence		V	D	P	Q	N	T	S	M	R	D	V	Y	R	K	F	D	L	G	Q	D	V	I	D	F	T	G	H	A	L	A	L	Y	R	T	D	D	Y	L	D	Q	P	C	L	E	T	I	N	R	I	K	L	Y	S	E	S	L	A	R	Y	G	K	S	P	Y	L	Y	P	L	Y	.	.	G	L	G	E	L	P	Q	G	F
Template Known Secondary structure				T	T	T	S	B								T	T													T	S			S	S	S	G	G	G	G	S	B	S													T			G	G	G			S					T	T	.	.		T	T
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	M	V	V	R	K	G	G	E	V	L	T	R	T	R	A	T	S	A	R	R	E	N	G	L	W	I	V	E	A	E	D	I	D	T	G	K	K	Y	S	W	Q	A	R	G	L	V	N	A	T	G	P	W	V	K	Q	F
Query Conservation
Alig confidence																																					.	.	.	.	.
Template Conservation																																					.	.	.	.	.
Template Sequence		A	R	L	S	A	I	Y	G	G	T	Y	M	L	N	K	P	V	D	D	I	I	M	E	N	G	K	V	V	G	V	K	S	E	G	E	.	.	.	.	.	V	A	R	C	K	Q	L	I	C	D	P	S	Y	V	P	D	R	V
Template Known Secondary structure									T					S	S									B	T	T	B							T	T		.	.	.	.	.			B		S						G	G	G		G	G	G
Template Predicted Secondary structure																																					.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.						.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions