Job Description P39309 Confidence 87.80% Date Thu Jan 5 11:59:12 GMT 2012 Rank 78 Aligned Residues 77 % Identity 9% Template c3ppbB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative tetr family transcription regulator; PDBTitle: crystal structure of a putative tetr family transcription regulator2 (shew_3104) from shewanella sp. pv-4 at 2.10 a resolution Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	R	L	L	E	I	N	H	A	H	L	Q	L	M	E	S	L	L	D	E	G	K	K	H	N	I	F	K	P	D	I	D	P	L	Q	V	N	I	N	I	A	A	L	G	G	Y	Y	L	I	N	Q	H	T	L	G	L	V	Y	H	I	S	M	V	S	P	Q	A	L	E	A	R	R	K	V	I	K	E	T	I
Query Conservation
Alig confidence																																.																								.	.	.	.	.	.	.	.
Template Conservation																																.																								.	.	.	.	.	.	.	.
Template Sequence		Q	S	V	R	D	Q	A	X	H	G	I	L	G	F	I	A	E	L	I	R	Q	G	Q	A	S	G	E	L	A	E	.	Y	P	I	E	L	X	Q	D	N	C	H	G	Q	Y	L	A	A	T	R	Y	F	V	D	.	.	.	.	.	.	.	.	H	P	E	R	W	Q	Q	A	H	E	R	S	A	S	F	A	L	F
Template Known Secondary structure											T	T	T													T	T	S	B			.	S																							.	.	.	.	.	.	.	.	S	G	G	G	G	G
Template Predicted Secondary structure																																.																								.	.	.	.	.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.									170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		95	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	W	L	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	N	A	X	A	V
Template Known Secondary structure						B
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions