Job Description P39309 Confidence 95.88% Date Thu Jan 5 11:59:12 GMT 2012 Rank 40 Aligned Residues 74 % Identity 12% Template c1jumB_ PDB info PDB header:transcription Chain: B: PDB Molecule:hypothetical transcriptional regulator in qaca PDBTitle: crystal structure of the multidrug binding transcriptional2 repressor qacr bound to the natural drug berberine Resolution 2.98 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	R	L	L	E	I	N	H	A	H	L	Q	L	M	E	S	L	L	D	E	G	K	K	H	N	I	F	K	P	D	I	D	P	L	Q	V	N	I	N	I	A	A	L	G	G	Y	Y	L	I	N	Q	H	T	L	G	L	V	Y	H	I	S	M	V	S	P	Q	A	L	E	A	R	R	K	V	I	K	E	T	I
Query Conservation
Alig confidence																																	.													.	.	.	.	.	.	.	.	.
Template Conservation																																	.													.	.	.	.	.	.	.	.	.
Template Sequence		N	E	K	M	N	K	L	E	N	K	Y	I	D	A	Y	H	V	I	F	K	E	G	N	L	N	G	E	W	S	I	N	.	D	V	N	A	V	S	K	I	A	A	N	A	.	.	.	.	.	.	.	.	.	V	N	G	I	V	T	F	T	H	E	Q	N	I	N	E	R	I	K	L	M	N	K	F	S	Q	I	F
Template Known Secondary structure													T														S	S				S	.													.	.	.	.	.	.	.	.	.							T	T	T	T	S
Template Predicted Secondary structure																																	.													.	.	.	.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.										.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		95	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	W	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	N	G	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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