Job Description P0AA47 Confidence 92.26% Date Thu Jan 5 11:11:54 GMT 2012 Rank 8 Aligned Residues 333 % Identity 11% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.						.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure																										.									.	.	.	.	.
Query SS confidence																										.									.	.	.	.	.
Query Sequence		P	T	A	Y	A	F	A	L	I	A	I	L	F	T	A	L	S	Y	G	K	L	V	R	R	.	Y	P	S	A	G	S	A	Y	.	.	.	.	.	T	Y	A	Q	K	S	I	S	P	T	V	G	F	M	V	G	W	S	S	L	L	D	Y	L	F	A	P	M	I	N	I	L	L	A	K	I	Y	F	E	A	L	V
Query Conservation																										.									.	.	.	.	.
Alig confidence																										.									.	.	.	.	.
Template Conservation
Template Sequence		P	L	P	W	A	T	Y	S	F	L	S	V	A	F	A	Y	F	F	F	V	R	K	M	E	V	I	R	P	S	S	T	L	V	P	L	V	G	E	K	H	A	K	G	L	F	G	T	I	V	D	N	F	Y	L	V	A	L	I	F	A	M	G	T	S	L	G	L	A	T	P	L	V	T	E	C	M	Q	W	L	F
Template Known Secondary structure																					T	S						S	S	G	G	G	G		T	T	T		S	S		T	T	S	S																																	T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.									.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170							.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Query Sequence		P	S	I	P	S	W	M	F	V	V	A	L	V	A	F	M	T	A	F	N	L	R	.	.	.	.	.	.	.	.	S	L	K	S	V	A	N	F	N	T	V	I	V	V	L	Q	V	V	L	I	A	V	I	.	.	.	.	.	.	L	G	M	V	V	Y	G	V	F	E	G	E	G	A	G	T	L	A	S	T	R
Query Conservation																								.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Template Conservation
Template Sequence		G	I	P	H	T	L	Q	L	D	A	I	I	I	T	C	W	I	I	L	N	A	I	C	V	A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F	L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	F	T	D	S	V	G	M	L	L	M	Y	L	P	R	M	L	F	Y
Template Known Secondary structure		T				T																				S	S				T	T																																																T
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.									.	260	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.
Query Sequence		P	F	W	S	G	D	A	H	V	I	P	M	I	T	G	A	T	I	L	C	F	S	F	T	G	F	D	G	I	S	N	L	S	E	E	T	K	D	A	E	R	V	I	P	R	A	I	F	L	T	A	L	I	G	G	M	I	F	I	F	A	T	Y	F	L	Q	L	.	.	.	.	.	.	.	.	Y	F	P	D	I
Query Conservation																																																																					.	.	.	.	.	.	.	.
Alig confidence																																							.	.																													.	.	.	.	.	.	.	.
Template Conservation																																							.	.
Template Sequence		T	D	P	I	A	K	G	G	F	P	Q	G	W	T	V	F	Y	W	A	W	W	V	I	Y	A	I	Q	M	S	I	F	L	A	R	I	S	R	.	.	G	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I
Template Known Secondary structure					S	S								T											T											T		S	.	.	S																																			T	T	S
Template Predicted Secondary structure																																							.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340			.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	F	K	D	P	D	A	S	Q	P	E	I	M	L	Y	V	A	G	K	A	F	Q	V	G	A	L	I	F	S	T	I	T	V	L	A	S	G	M	A	A	H	A	G	V	A	R	L	M	Y	V	M	G	R	D	G	V	F	P	K	S	F	F	G	Y	V	H	P	K	W	R	T	P	A	M	N	I	I	L	V
Query Conservation
Alig confidence																																																														.	.	.	.
Template Conservation																																																														.	.	.	.
Template Sequence		P	N	L	I	E	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V	R	D	G	.	.	.	.	E	E	P	P	L	L	V	R	I	G	W	S	I	L	V	G
Template Known Secondary structure						G	G	G												T	S	S	S	T	T																												T	T	S		S	S	S	S	S	.	.	.	.		S	S		S	T	T
Template Predicted Secondary structure																																																														.	.	.	.
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.					.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	I	A	L	L	A	I	N	F	D	L	V	M	A	T	A	L	I	N	F	G	A	L	V	A	F	T	F	V	N	L	S	V	I	S	Q	F	W	I	R	E	K	R	N	K	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	G	I	V	L	L	A	L	G	G	L	K	P	I	Q	T	A	I	I	A	G	G	C	P	L	F	F	V	N	I	M	V	T	L	S	F	I	K	D	A	K	Q	N	W	K	D
Template Known Secondary structure												S	S																																T
Template Predicted Secondary structure
Template SS confidence
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions