Job Description P0AA47 Confidence 100.00% Date Thu Jan 5 11:11:54 GMT 2012 Rank 1 Aligned Residues 424 % Identity 20% Template c3giaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Resolution 2.32 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		R	K	T	L	T	L	V	P	V	V	M	M	G	L	A	Y	M	Q	P	M	T	L	F	D	T	F	G	I	V	S	G	L	T	D	G	H	V	P	T	A	Y	A	F	A	L	I	A	I	L	F	T	A	L	S	Y	G	K	L	V	R	R	Y	P	S	A	G	S	A	Y	T	Y	A	Q	K	S	I	S	P	.	T
Query Conservation																																																																																.
Alig confidence																																																																																.
Template Conservation
Template Sequence		N	K	K	L	S	L	W	E	A	V	S	M	A	V	G	V	M	I	G	A	S	I	F	S	I	F	G	V	G	A	K	I	A	G	R	N	L	P	E	T	F	I	L	S	G	I	Y	A	L	L	V	A	Y	S	Y	T	K	L	G	A	K	I	V	S	N	A	G	P	I	A	F	I	H	K	A	I	G	D	N	I
Template Known Secondary structure					B																		T	T	T	S									G	G	G																								T	T				T	T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130					.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.
Query SS confidence																																							.	.	.	.
Query Sequence		V	G	F	M	V	G	W	S	S	L	L	D	Y	L	F	A	P	M	I	N	I	L	L	A	K	I	Y	F	E	A	L	V	P	S	I	P	S	.	.	.	.	W	M	F	V	V	A	L	V	A	F	M	T	A	F	N	L	R	S	L	K	S	V	A	N	F	N	T	V	I	V	V	L	Q	V	V	L	I	A	V
Query Conservation																																							.	.	.	.
Alig confidence																																							.	.	.	.
Template Conservation
Template Sequence		I	T	G	A	L	S	I	L	L	W	M	S	Y	V	I	S	I	A	L	F	A	K	G	F	A	G	Y	F	L	P	L	I	N	A	P	I	N	T	F	N	I	A	I	T	E	I	G	I	V	A	F	F	T	A	L	N	F	F	G	S	K	A	V	G	R	A	E	F	F	I	V	L	V	K	L	L	I	L	G	L
Template Known Secondary structure																																	T	T																										T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	G	M	V	V	Y	G	V	F	E	G	E	G	A	G	T	L	A	S	T	R	P	F	W	S	G	D	A	H	V	I	P	M	I	T	G	A	T	I	L	C	F	S	F	T	G	F	D	G	I	S	N	L	S	E	E	T	K	D	A	E	R	V	I	P	R	A	I	F	L	T	A	L	I	G	G	M	I	F
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.
Template Sequence		F	I	F	A	G	L	I	T	I	H	P	S	Y	V	I	P	D	L	A	.	.	.	.	.	.	.	.	P	S	A	V	S	G	M	I	F	A	S	A	I	F	F	L	S	Y	M	G	F	G	V	I	T	N	A	S	E	H	I	E	N	P	K	K	N	V	P	R	A	I	F	I	S	I	L	I	V	M	F	V	Y
Template Known Secondary structure												G	G	G	T	S				S	.	.	.	.	.	.	.	.														G	G	G	G	G	T							T	T	G	G	G	B	S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.									.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	A	T	Y	F	L	Q	L	Y	F	P	D	I	S	R	F	K	D	P	D	A	S	Q	P	E	I	M	L	Y	V	A	G	K	A	F	Q	V	G	A	L	I	F	S	T	I	T	V	L	A	S	G	M	A	A	H	A	G	V	A	R	L	M	Y	V	M	G	R	D	G	V	F	P	K	S	F	F	G	Y	V
Query Conservation
Alig confidence																																																																												.
Template Conservation																																																																												.
Template Sequence		V	G	V	A	I	S	A	I	G	N	L	P	I	D	E	L	I	K	A	S	E	N	A	L	A	V	A	A	K	P	F	L	G	N	L	G	F	L	L	I	S	I	G	A	L	F	S	I	S	S	A	M	N	A	T	I	Y	G	G	A	N	V	A	Y	S	L	A	K	D	G	E	L	P	E	.	F	F	E	R	K
Template Known Secondary structure										T	T	S								T	G	G	G																																			T	T	T											S	S			S	.	S			T	T
Template Predicted Secondary structure																																																																												.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	P	K	W	R	T	P	A	M	N	I	I	L	V	G	A	I	A	L	L	A	I	N	F	D	L	V	M	A	T	A	L	I	N	F	G	A	L	V	A	F	T	F	V	N	L	S	V	I	S	Q	F	W	I	R	E	K	R	N	K	T	L	K	D	H	F	Q	Y	L	F	L	P	M	C	G	A	L	T	V	G
Query Conservation
Alig confidence						.																																																						.	.	.	.
Template Conservation						.																																																						.	.	.	.
Template Sequence		V	W	F	K	.	S	T	E	G	L	Y	I	T	S	A	L	G	V	L	F	A	L	L	F	N	M	E	G	V	A	S	I	T	S	A	V	F	M	V	I	Y	L	F	V	I	L	S	H	Y	I	L	I	D	E	V	G	G	R	.	.	.	.	K	E	I	V	I	F	S	F	I	V	V	L	G	V	F	L	L	L
Template Known Secondary structure		S			S	.		T																	S																											T								.	.	.	.
Template Predicted Secondary structure						.																																																						.	.	.	.
Template SS confidence
		316	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.					.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	W	V	N	L	E	E	S	S	M	V	L	G	L	I	W	A	A	I	G	L	I	Y	L	A	C	V	T	K	S	F	R	N	P	V	P	Q	Y	E	D	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Y	Y	Q	W	I	T	N	R	F	V	F	Y	G	I	I	A	T	F	I	G	V	L	I	F	E	I	I	Y	R	K	V	T	K	R	T	F	S	N	N	M	Y	V
Template Known Secondary structure																																								G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.