Return to main results Retrieve Phyre Job Id

Job DescriptionP31058
Confidence99.28%DateThu Jan 5 11:46:54 GMT 2012
Rank15Aligned Residues135
% Identity16%Templated1n12a_
SCOP infoCommon fold of diphtheria toxin/transcription factors/cytochrome f Bacterial adhesins Pilus subunits
Resolution1.87

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   252.......260.........270.........280 .........290.........300.........310.........320.........330
Predicted Secondary structure 













.































Query SS confidence 




























.

















































Query Sequence  PTCFTSILTGPSVNGSTVRMGEYSSGTIK. NGASPVPFDISLQNCIRVRNIETKLVTGKVGTQNTQLLGNTLTGSTAAKG
Query Conservation 



   
    

  

 

    
 
 .  





 
 



       
 
         
 

 
   

  


Alig confidence 




........















.

































...












Template Conservation 




........
 
 



 
            
     
 
                    ...     

 

  
Template Sequence  PACTV. . . . . . . . SNTTVDWQDVEIQTLSQNGNHEKEFTVNXRCPYNLGTXKVTITATNTYNNA. . . ILVQNTSNTSSDG
Template Known Secondary structure 


........










GGG

TT

S


S

SSTT...
TT
BSSTT
Template Predicted Secondary structure 

........

























...









Template SS confidence 















































































   13.... ..20.........30.........40.........50.........60........ .70.........80.
 
   331........340.........350.........360.........370.........380.........390.........400.........410
Predicted Secondary structure 















































Query SS confidence 















































































Query Sequence  VGVLIEGLATSKNPLMTLKPNDTNSVYIDYETEDDTSDGVYPNQGNGTSQPLHFQATLKQDGNIAIEPGEFKATSTFQVT
Query Conservation 


 
     
      
 
    
                          
 





 

  




 
 
 





Alig confidence 





..............



























































Template Conservation 


 
 ..............
                                  




  
  
  
 
 




 
 
Template Sequence  LLVYLY. . . . . . . . . . . . . . NSNAGNIGTAITLGTPFTPGKITGNNADKTISLHAKLGYKGNXQNLIAGPFSATATLVAS
Template Known Secondary structure  ..............TT

TTS
B

S

SSSS
GGGB

S





Template Predicted Secondary structure  ..............









































Template SS confidence 















































































   82..... ..90.........100.........110.........120.........130.........140.......
 
   411
Predicted Secondary structure 
Query SS confidence 
Query Sequence  Y
Query Conservation 
Alig confidence 
Template Conservation 
Template Sequence  Y
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 
   148
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions