Return to main results Retrieve Phyre Job Id

Job DescriptionP31058
Confidence99.74%DateThu Jan 5 11:46:54 GMT 2012
Rank12Aligned Residues144
% Identity22%Templatec2jmrA_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:fimf; PDBTitle: nmr structure of the e. coli type 1 pilus subunit fimf
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   245....250.........260.........270.........280.. .......290.........300.........310.........320.
Predicted Secondary structure 



















...





















Query SS confidence 





































. . .






































Query Sequence  NNVKLTLPTCFTSILTGPSVNGSTVRMGEYSSGTIKNG. . . ASPVPFDISLQNCIRVRNIETKLVTGKVGTQNTQLLGNT
Query Conservation      
  



   
    

  

 

    
 
   ...





 
 



       
 
         
 

 
 
Alig confidence 

















....















...


















.


















Template Conservation 


 
   

 
      ....  



 
    
   
       
 
    
      .                   
Template Sequence  IRGYVRDNGCSVAAESTN. . . . FTVDLMENAAKQFNNIGATTPVVPFRILLSPCGNAVSA. VKVGFTGVADSHNANLLAL
Template Known Secondary structure  SS



SSS



....


B

GGG

STT
B





B
S

S



.


B
SS
TTSB

Template Predicted Secondary structure 





....



















.







Template SS confidence 















































































   8.10.........20..... ....30.........40.........50.........60... ......70.........80..
 
   322.......330.........340.........350.........360.........370.........380.........390.........400.
Predicted Secondary structure 























































Query SS confidence 















































































Query Sequence  LTGSTAAKGVGVLIEGLATSKNPLMTLKPNDTNSVYIDYETEDDTSDGVYPNQGNGTSQPLHFQATLKQDGNIAIEPGEF
Query Conservation    

  





 
     
      
 
    
                          
 





 

  




 
Alig confidence 




















.................
































.







Template Conservation        
 



 
    
  .................
  
                  
 
 
 
  
 .  

 
  
Template Sequence  ENTVSAASGLGIQLLNEQQNQ. . . . . . . . . . . . . . . . . IPLNAPSSALSWTTLTPGKPNTLNFYARLMATQ. VPVTAGHI
Template Known Secondary structure 

STTB
SSTT

B.................

SSS
GGGS





SSS
B


SS.





Template Predicted Secondary structure 












.................














.



Template SS confidence 















































































   83......90.........100... ......110.........120.........130...... ...140....
 
   402.......410.
Predicted Secondary structure 
Query SS confidence 









Query Sequence  KATSTFQVTY
Query Conservation   
 






Alig confidence 









Template Conservation   
 


 
 
Template Sequence  NATATFTLEY
Template Known Secondary structure 


Template Predicted Secondary structure 
Template SS confidence 









   145....150....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions