Job Description P37661 Confidence 98.18% Date Thu Jan 5 11:56:34 GMT 2012 Rank 33 Aligned Residues 290 % Identity 15% Template c3e2dB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: the 1.4 a crystal structure of the large and cold-active2 vibrio sp. alkaline phosphatase Resolution 1.40 Å

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		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.										.	.	.	270	.	.	.	.	.	.	.	.	.	280				.	.	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.															.	.	.											.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.															.	.	.											.	.	.
Query Sequence		V	D	D	T	Y	V	V	F	I	I	G	E	T	T	R	W	D	H	M	G	I	F	.	.	.	.	.	.	.	.	.	G	Y	E	R	N	T	T	P	K	L	A	Q	E	K	.	.	.	N	L	A	A	F	R	G	Y	S	C	.	.	.	D	T	A	T	K	L	S	L	R	C	M	F	V	R	Q	G	G	A	E
Query Conservation																								.	.	.	.	.	.	.	.	.															.	.	.											.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.															.	.	.											.	.	.
Template Conservation
Template Sequence		A	E	I	K	N	V	I	L	M	I	G	D	G	M	G	P	Q	Q	V	G	L	L	E	T	Y	A	N	Q	A	P	N	S	I	Y	K	G	N	K	T	A	I	Y	Q	L	A	Q	E	G	V	I	G	S	S	L	T	H	P	E	D	A	I	V	V	D	S	A	C	S	A	T	M	L	A	T	G	I	Y	S	S	S
Template Known Secondary structure																															T	T		T	T	T	T												S										T	T	S	S	S													S	S				T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		310	.	.	.	.	.	.	.	.				.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	N	P	Q	R	T	L	K	E	.	.	.	Q	N	I	F	A	V	L	K	Q	L	G	F	S	S	D	L	Y	A	M	Q	S	E	M	W	F	Y	S	N	T	M	A	D	N	I	A	Y	R	E	Q	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation											.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	V	I	G	I	D	S	Q	G	N	H	V	E	T	V	L	E	K	A	K	K	A	G	K	A	T	G	L	V	S	D	T	R	L	T	H	A	T	P	A	S	F	A	A	H	Q	P	H	R	S	L	E	N	Q	I	A	S	D	M	L	A	T	G	A	D	V	M	L	S	G	G	L	R	H	W	I	P	K	S	T
Template Known Secondary structure		T		B	S	B		T	T	S		B											T	T											T	T	S					T	T	T			B	S		T	T													T		S							G	G	G	S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
																359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380											.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	E	P	R	N	R	G	K	P	V	D	D	M	L	L	V	D	E	M	Q	Q	.	.	.	.	.	.	.	.	.	.	S	L	G	R	N	P	D	G	K	H	L	I	I	L	H	T	K	G	S	H	F	N	Y	T	Q	R	Y	P	R	S	F	A	Q	W
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation																																																													.	.
Template Sequence		N	D	K	G	E	T	Y	K	Q	L	E	K	L	T	Q	G	D	V	Y	L	K	S	K	R	K	D	D	R	N	L	L	T	E	A	E	K	D	G	Y	Q	L	A	F	N	R	N	M	L	D	D	A	K	G	D	K	L	L	G	L	.	.	F	A	Y	S	G	M	D	D	G	I	A	Y	S	N	K	K	K	S	G
Template Known Secondary structure		G	G	T	S										T	T	T		S							S	S											T	T					S	S									S	S						.	.		S	S	S	S														T
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		415	.	.	.	.	420	.	.																															.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.		.	.	.	.	.	460	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Query Sequence		K	P	E	C	I	G	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	C	T	K	A	Q	M	I	N	S	Y	D	N	S	V	T	Y	V	D	H	F	I	S	S	V	I	D	Q	V	R	D	.	K	K	A	I	V	F	Y	A	A
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.																		.
Template Conservation																																																			.	.	.	.
Template Sequence		E	R	T	Q	P	S	L	K	E	M	T	Q	K	A	L	N	I	L	S	K	D	E	D	G	F	F	L	M	V	E	G	G	Q	I	D	W	A	G	H	S	N	D	A	G	T	M	L	H	E	.	.	.	.	L	L	K	F	D	E	A	I	Q	T	V	Y	E	W	A	K	D	R	E	D	T	I	V	I	V	T	A
Template Known Secondary structure					S															T	T		T	T										S							T	T									.	.	.	.																T	T		S	S
Template Predicted Secondary structure																																																			.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.					.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		464	.				.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.										.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
Predicted Secondary structure				.	.	.																																																				.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.																																																				.	.	.	.	.	.	.	.	.
Query Sequence		D	H	.	.	.	G	E	S	I	N	E	R	E	H	L	H	G	T	P	R	E	L	A	P	P	E	Q	F	R	V	P	M	M	V	W	M	S	D	K	Y	L	E	N	P	A	N	A	Q	A	F	A	Q	L	K	K	E	.	.	.	.	.	.	.	.	.	A	D	M	K	V	P	R	R	H	V	E	L	Y	D	T
Query Conservation				.	.	.																																																				.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.																						.	.	.																												.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.
Template Sequence		D	H	E	T	G	S	F	G	F	S	Y	S	S	N	D	L	P	K	P	Q	K	R	S	G	E	A	.	.	.	F	A	D	R	D	Y	A	P	N	F	N	F	G	A	F	D	I	L	D	G	L	Y	N	Q	K	Q	S	Y	Y	G	M	I	S	E	F	Q	K	L	D	K	S	L	Q	T	P	E	K	L	A	E	I
Template Known Secondary structure						S							B	S	S	S					B			S	S	G	G	.	.	.	G	S	S	S		B			S	S	B				T								T			S											T	S		G	G	G
Template Predicted Secondary structure																												.	.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340				.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		532	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	M	G	C	L	G	Y	T	S	P	D	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	N	K	N	S	E	F	P	I	T	A	E
Template Known Secondary structure							S	S
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions