 |
Job Description | P0ADI4 | Confidence | 63.62% | Date | Thu Jan 5 11:21:04 GMT 2012 |
Rank | 71 | Aligned Residues | 98 |
% Identity | 14% | Template | c3bgwD_ |
PDB info |
PDB header:replication | Chain: D: PDB Molecule:dnab-like replicative helicase; |
PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase
|
Resolution | 3.91 Å |
|
 |
  |   |
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | |
|
|
. | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
| . | . | . |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
R | A | A | L | L | I | H | D | M | Q | D | Y | F | V | S | F | W | G | E | N | C | P | M | M | E | Q | V | I | A | N | I | A | A | L | R | D | Y | C | K | Q | H | N | I | P | V | Y | Y | T | A | Q | P | K | E | Q | . |
. |
. |
S | D | E | D | R | A | L | L | N | D | M | W | G | P | G | . |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
|
|
|
|
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |
|
|   |   |
|
|   |   |
|
|
|
|
|   |
|   |   |   |   |   |   | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |   |   |
|
|
|
|   |
|   |   | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |
|
|   |   |   |   |
|   |
|
|   |   |   |
|
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |
|   |   |
|   |   |   |
|
|   |
Template Sequence |   |
K | R | V | I | V | M | I | D | Y | L | Q | L | . |
L | E | P | A | K | A | N | D | S | R | T | N | Q | I | S | Q | I | S | R | D | L | K | K | M | A | R | E | L | D | V | V | V | I | A | L | S | Q | L | S | R | Q | V | E | Q | R | Q | D | K | R | P | M | L | S | D | L | R | E | S | G | Q | L | E | Q | D | A | D | I |
Template Known Secondary structure |   |
S |
|  |  |  |  |  |  |
| S | S | S | . | S | B |
| S |
| S | S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  |  |
|
| G | G | G | G | G | S | S |
|
|
|
|
| G | G | G |
|
| S |
| S |  |  |  |  |  |
| S |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|  |  |  | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
308 | . | 310 | . | . | . | . | . | . | . | . | . | |
320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . |
  |
  |   |
|
99 | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
. |
|
|
|
|
|
|  |  |  |
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
L | T | R | S | P | E | Q | Q | K | V | V | D | R | L | T | P | D | A | D | D | T | V | L | V | K | W | R | Y | S | A |
Query Conservation |   |
. |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|   |   |   |
|   |
|
|   |
|   |   |   |
|
|
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|
|   |
|   |
Template Sequence |   |
I | E | F | L | Y | R | D | D | Y | Y | D | K | E | S | E | S | K | N | I | V | E | V | I | I | A | K | H | R | D | G | P |
Template Known Secondary structure |   |
 |  |  |  |
| B | G | G | G | T |
| T | T |
| S | S | T | T |  |  |  |  |  |  |
|
|
| T | T | S |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
387 | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|