Job Description P06846 Confidence 99.92% Date Thu Jan 5 10:59:26 GMT 2012 Rank 51 Aligned Residues 252 % Identity 14% Template d8abpa_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.49

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.									.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.				.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.																		.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.																		.	.	.
Query Sequence		L	E	I	N	D	P	Y	Y	L	A	I	R	H	G	I	E	T	Q	C	E	K	L	G	I	E	L	T	N	C	Y	E	H	S	G	L	P	D	.	.	.	.	.	.	.	.	I	K	N	V	T	G	I	L	I	V	G	K	P	T	P	A	L	.	.	.	R	A	A	A	S	A	L	T	D	N	I	C	F	I	D
Query Conservation																																							.	.	.	.	.	.	.	.																		.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.																		.	.	.
Template Conservation
Template Sequence		K	Q	P	E	E	P	W	F	Q	T	E	W	K	F	A	D	K	A	G	K	D	L	G	F	E	V	I	K	I	A	V	P	D	G	E	K	T	L	N	A	I	D	S	L	A	A	S	G	A	K	G	F	V	I	C	T	P	D	P	K	L	G	S	A	I	V	A	K	A	R	G	Y	D	M	K	V	I	A	V	D
Template Known Secondary structure		S		T	T	S																		T										S														T	T									S		G	G	G											T	T							S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		144	.	.	.	.							.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.								.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure							.	.	.	.	.	.																													.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.																													.	.	.	.	.	.	.
Query Sequence		F	H	E	P	G	.	.	.	.	.	.	S	G	Y	D	A	V	D	I	D	L	A	R	I	S	K	E	I	I	D	F	Y	I	N	Q	G	V	N	R	.	.	.	.	.	.	.	I	G	F	I	G	G	E	D	E	P	G	K	A	D	I	R	E	V	A	F	A	E	Y	G	R	L	K	Q	V	V	R	E	E	D
Query Conservation							.	.	.	.	.	.																													.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	Q	F	V	N	A	K	G	K	P	M	D	T	V	P	L	V	M	L	A	A	T	K	I	G	E	R	Q	G	Q	E	L	Y	K	E	M	Q	K	R	G	W	D	V	K	E	S	A	V	M	A	I	T	A	N	E	L	D	T	A	R	R	R	T	T	G	S	M	D	A	L	K	A	A	G	F	P	E	K	Q	I
Template Known Secondary structure		S			B		T	T	S		B		T	T	S																										T			G	G	G									T	T	S																		T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		211	.			.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.						.	280	.
Predicted Secondary structure				.	.																									.	.																																											.	.	.	.	.
Query SS confidence				.	.																									.	.																																											.	.	.	.	.
Query Sequence		I	W	.	.	R	G	G	F	S	S	S	S	G	Y	E	L	A	K	Q	M	L	A	R	E	D	Y	P	K	.	.	A	L	F	V	A	S	D	S	I	A	I	G	V	L	R	A	I	H	E	R	G	L	N	I	P	Q	D	I	S	L	I	S	V	N	D	I	P	T	A	R	F	T	.	.	.	.	.	F	P	P
Query Conservation				.	.																									.	.																																											.	.	.	.	.
Alig confidence				.	.																									.	.																													.														.	.	.	.	.
Template Conservation																																																												.
Template Sequence		Y	Q	V	P	T	K	S	N	D	I	P	G	A	F	D	A	A	N	S	M	L	V	Q	H	P	E	V	K	H	W	L	I	V	G	M	N	D	S	T	V	L	G	G	V	R	A	T	E	G	Q	G	F	K	A	A	D	I	I	.	G	I	G	I	N	G	V	D	A	V	S	E	L	S	K	A	Q	A	T	G	F
Template Known Secondary structure							S	S	S	S													T	T		T	T		S							S	S														T	T			G	G	G			.					S	S	G	G	G					T	S	S	S			S
Template Predicted Secondary structure																																																												.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		L	S	T	V	R	I	H	S	E	M	M	G	S	Q	G	V	N	L	V	Y	E	K	A	R	D	G	R	A	L	P	.	L	L	V	F	V	P	S	K	L	K	L	R	G	T	T	R
Query Conservation																																.
Alig confidence																																.
Template Conservation
Template Sequence		Y	G	S	L	L	P	S	P	D	V	H	G	Y	K	S	S	E	M	L	Y	N	W	V	A	K	D	V	E	P	P	K	F	T	E	V	T	D	V	V	L	I	T	R	D	N	F	K
Template Known Secondary structure																																S												T	T	T
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions