Job Description P06846 Confidence 100.00% Date Thu Jan 5 10:59:26 GMT 2012 Rank 7 Aligned Residues 263 % Identity 19% Template d2nzug1 SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.50

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.											.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	V	N	Q	H	H	I	L	A	I	Y	S	Y	Q	Q	E	L	E	I	N	D	P	Y	Y	L	A	I	R	H	G	I	E	T	Q	C	E	K	L	G	I	E	L	T	N	C	Y	E	H	S	G	L	P	D	I	.	.	.	.	.	.	.	.	.	.	K	N	V	T	G	I	L	I	V	G	K	P	T	P	A
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.
Template Sequence		K	K	T	T	T	V	G	V	I	I	.	.	.	.	.	.	.	P	D	I	S	N	I	F	Y	A	E	L	A	R	G	I	E	D	I	A	T	M	Y	K	Y	N	I	I	L	S	N	S	D	Q	N	Q	D	K	E	L	H	L	L	N	N	M	L	G	K	Q	V	D	G	I	I	F	M	S	G	N	V	T	E	E
Template Known Secondary structure					S							.	.	.	.	.	.	.	S		T	T	S																	T	T									T	T														T	T			S							S
Template Predicted Secondary structure												.	.	.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.								.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		L	R	A	A	A	S	A	L	T	D	N	I	C	F	I	D	F	H	E	P	G	S	G	Y	D	A	V	D	I	D	L	A	R	I	S	K	E	I	I	D	F	Y	I	N	Q	G	V	N	R	I	G	F	I	G	G	E	D	E	P	G	K	A	D	I	.	R	E	V	A	F	A	E	Y	G	R	L	K	Q	V	V
Query Conservation																																																																		.
Alig confidence																																																																		.
Template Conservation
Template Sequence		H	V	E	E	L	K	K	S	P	V	P	V	V	L	A	A	S	I	E	S	T	N	Q	I	P	S	V	T	I	D	Y	E	Q	A	A	F	D	A	V	Q	S	L	I	D	S	G	H	K	N	I	A	F	V	S	G	T	L	E	E	P	I	N	H	A	K	K	V	K	G	Y	K	R	A	L	T	E	S	G	L	P
Template Known Secondary structure										S	S						S				T	T			S																					T	T		S							S		T	T	S					T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		207	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		R	E	E	D	.	I	W	R	G	G	F	S	S	S	S	G	Y	E	L	A	K	Q	M	L	A	R	E	D	Y	P	K	A	L	F	V	A	S	D	S	I	A	I	G	V	L	R	A	I	H	E	R	G	L	N	I	P	Q	D	I	S	L	I	S	V	N	D	I	P	T	A	R	F	T	F	P	P	L	S	T	V
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		V	R	D	S	Y	I	V	E	G	D	Y	T	Y	D	S	G	I	E	A	V	E	K	L	L	E	E	D	E	K	P	T	A	I	F	V	G	T	D	E	M	A	L	G	V	I	H	G	A	Q	D	R	G	L	N	V	P	N	D	L	E	I	I	G	F	D	N	T	R	L	S	T	M	V	R	P	Q	L	T	S	V
Template Known Secondary structure				G	G	G						S	S													T	S	S	S			S					S	S													T	T	T			T	T	T	T										G	G	G	G	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	H	S	E	M	M	G	S	Q	G	V	N	L	V	Y	E	K	A	R	D	G	R	A	L	P	L	L	V	F	V	P	S	K	L	K	L	R	G	T	T	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q	P	M	Y	D	I	G	A	V	A	M	R	L	L	T	K	Y	M	N	K	E	T	V	D	S	S	I	V	Q	L	P	H	R	I	E	F	R	Q	S	T	K
Template Known Secondary structure																					T	T				S		S												S	S
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions