Job Description P06846 Confidence 100.00% Date Thu Jan 5 10:59:26 GMT 2012 Rank 28 Aligned Residues 257 % Identity 20% Template d1tlfa_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.60

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.											.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		V	N	Q	H	H	I	L	A	I	Y	S	Y	Q	Q	E	L	E	I	N	D	P	Y	Y	L	A	I	R	H	G	I	E	T	Q	C	E	K	L	G	I	E	L	T	N	C	Y	E	H	S	G	L	P	D	I	.	.	.	.	.	.	.	.	.	.	K	N	V	T	G	I	L	I	V	G	K	P	T	P	A	.	.
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence										.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation										.	.	.	.	.	.	.
Template Sequence		S	L	L	I	G	V	A	T	.	.	.	.	.	.	.	S	S	L	A	L	H	A	P	S	Q	I	V	A	A	I	K	S	R	A	D	Q	L	G	A	S	V	V	V	S	M	V	E	R	S	G	V	E	A	C	K	A	A	V	H	N	L	L	A	Q	R	V	S	G	L	I	I	N	Y	P	L	D	D	Q	D	A
Template Known Secondary structure										.	.	.	.	.	.	.	S		T	T	S																	T	T										T	T														T	T			S
Template Predicted Secondary structure										.	.	.	.	.	.	.
Template SS confidence
		61	.	.	.	.	.	.	.								.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	A	A	A	S	A	L	T	D	N	I	C	F	I	D	F	H	E	P	G	S	G	Y	D	A	V	D	I	D	L	A	R	I	S	K	E	I	I	D	F	Y	I	N	Q	G	V	N	R	I	G	F	I	G	G	E	D	E	P	G	K	A	D	I	R	E	V	A	F	A	E	Y	G	R	L	K	Q	V	V	R
Query Conservation
Alig confidence																				.																																																										.
Template Conservation																				.																																																										.
Template Sequence		I	A	V	E	A	A	C	T	N	V	P	A	L	F	L	D	V	S	.	D	Q	T	P	I	N	S	I	I	F	S	H	E	D	G	T	R	L	G	V	E	H	L	V	A	L	G	H	Q	Q	I	A	L	L	A	G	P	L	S	S	V	S	A	R	L	R	L	A	G	W	H	K	Y	L	T	R	N	.	Q	I	Q
Template Known Secondary structure								T	T	T	S							S		.	T	T	S	S	S																					T	T											T	T																		T	.	T
Template Predicted Secondary structure																				.																																																										.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	D	I	W	R	G	G	F	S	S	S	S	G	Y	E	L	A	K	Q	M	L	A	R	E	D	Y	P	K	A	L	F	V	A	S	D	S	I	A	I	G	V	L	R	A	I	H	E	R	G	L	N	I	P	Q	D	I	S	L	I	S	V	N	D	I	P	T	A	R	F	T	F	P	P	L	S	T	V	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	I	A	E	R	E	G	D	W	S	A	M	S	G	F	Q	Q	T	M	Q	M	L	N	E	G	I	V	P	T	A	M	L	V	A	N	D	Q	M	A	L	G	A	M	R	A	I	T	E	S	G	L	R	V	G	A	D	I	S	V	V	G	Y	D	D	T	E	D	S	S	C	Y	I	P	P	L	T	T	I	K	Q
Template Known Secondary structure			S							S	S														T	T				S					S	S														T	T			B	T	T	T	B									G	G	G	G	G	S	S	S
Template Predicted Secondary structure
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	E	M	M	G	S	Q	G	V	N	L	V	Y	E	K	A	R	D	G	R	A	L	P	L	L	V	F	V	P	S	K	L	K	L	R	G	T	T
Query Conservation
Alig confidence																									.
Template Conservation																									.
Template Sequence		D	F	R	L	L	G	Q	T	S	V	D	R	L	L	Q	L	S	Q	G	Q	A	V	K	.	G	N	Q	L	L	P	V	S	L	V	K	R	K	T	T
Template Known Secondary structure																			T	T					.	S												S	S
Template Predicted Secondary structure																									.
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions