Phyre 2 alignment of P06846 with d1jx6a

Job Description P06846
Confidence 99.96% Date Thu Jan 5 10:59:26 GMT 2012

Rank 42 Aligned Residues 292

% Identity 16% Template d1jx6a_

SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like

Resolution 1.50

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence	T	V	S	R	V	L	N	D	D	P	T	L	N	V	K	E	E	T	K	H	R	I	L	E	I	A	E	K	L	E	Y	K	T	S	.	S	A	R	K	L	Q	T	G	A	V	N	Q	H	H	I	L	A	I	Y	S	Y	Q	Q	E	L	E	I	N	D	P	Y	Y	L	A	I	R	H	G	I	E	T	Q	C	E	K
Query Conservation																																			.
Alig confidence											.	.	.	.	.	.	.	.						.	.										.																								.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.						.	.																																		.	.	.	.
Template Sequence	G	Y	Q	E	F	L	D	E	F	P	.	.	.	.	.	.	.	.	E	Q	R	N	L	.	.	T	N	A	L	S	E	A	V	R	A	Q	P	V	P	L	S	K	P	T	Q	R	P	I	K	I	S	V	V	Y	P	G	Q	Q	.	.	.	.	V	S	D	Y	W	V	R	N	I	A	S	F	E	K	R	L	Y	K
Template Known Secondary structure											.	.	.	.	.	.	.	.						.	.										S						S	S			S	S												S	.	.	.	.	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.						.	.																																		.	.	.	.
Template SS confidence
	30	.	.	.	.	.	.	.	.	.									40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.					.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.

	96	.	.	.	100	.	.					.	.	.	.	.	.	.	110	.	.										.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.								.	.	.	.	150	.	.	.
Predicted Secondary structure								.	.	.	.											.	.	.	.	.	.	.	.	.													.	.																						.	.	.	.	.	.	.
Query SS confidence								.	.	.	.											.	.	.	.	.	.	.	.	.													.	.																						.	.	.	.	.	.	.
Query Sequence	L	G	I	E	L	T	N	.	.	.	.	C	Y	E	H	S	G	L	P	D	I	.	.	.	.	.	.	.	.	.	K	N	V	T	G	I	L	I	V	G	K	P	.	.	T	P	A	L	R	A	A	A	S	A	L	T	D	N	I	C	F	I	D	F	H	.	.	.	.	.	.	.	E	P	G	S	G	Y	D	A
Query Conservation								.	.	.	.											.	.	.	.	.	.	.	.	.													.	.																						.	.	.	.	.	.	.
Alig confidence								.	.	.	.											.	.	.	.	.	.	.	.	.													.	.																						.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	N	I	N	Y	Q	L	N	Q	V	F	T	R	P	N	A	D	I	K	Q	Q	S	L	S	L	M	E	A	L	K	S	K	S	D	Y	L	I	F	T	L	D	T	T	R	H	R	K	F	V	E	H	V	L	D	S	T	N	T	K	L	I	L	Q	N	I	T	T	P	V	R	E	W	D	K	H	Q	P	F	L	Y
Template Known Secondary structure	T	T												T	T																T	T		S							S	S	S	T	T												S							T			S		B	G	G	G	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
	96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.

	154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence	V	D	I	D	L	A	R	I	S	K	E	I	I	D	F	Y	I	N	Q	G	V	N	R	I	G	F	I	G	G	E	D	.	E	P	G	K	A	D	I	R	E	V	A	F	A	E	Y	G	R	L	K	Q	V	V	R	E	E	D	I	W	R	G	G	F	S	S	S	S	G	Y	E	L	A	K	Q	M	L	A	R	E
Query Conservation																																.
Alig confidence																																.
Template Conservation
Template Sequence	V	G	F	D	H	A	E	G	S	R	E	L	A	T	E	F	G	K	F	F	P	K	H	T	Y	Y	S	V	L	Y	F	S	E	G	Y	I	S	D	V	R	G	D	T	F	I	H	Q	V	N	R	D	N	N	F	E	L	Q	S	A	Y	Y	T	K	A	T	K	Q	S	G	Y	D	A	A	K	A	S	L	A	K	H
Template Known Secondary structure																				S		T	T									S	T	T																														S	S
Template Predicted Secondary structure
Template SS confidence
	176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.

	233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.			.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.									.
Query SS confidence																																												.	.									.
Query Sequence	D	Y	P	K	A	L	F	V	A	S	D	S	I	A	I	G	V	L	R	A	I	H	E	R	G	L	N	I	P	Q	D	I	S	L	I	S	V	N	D	I	P	T	A	.	.	R	F	T	F	P	P	L	S	.	T	V	R	I	H	S	E	M	M	G	S	Q	G	V	N	L	V	Y	E	K	A	R	D	G	R	A
Query Conservation																																												.	.									.
Alig confidence																											.	.	.															.	.									.
Template Conservation																											.	.	.
Template Sequence	P	D	V	D	F	I	Y	A	C	S	T	D	V	A	L	G	A	V	D	A	L	A	E	L	G	R	.	.	.	E	D	I	M	I	N	G	W	G	G	G	S	A	E	L	D	A	I	Q	K	G	D	L	D	I	T	V	M	R	M	N	D	D	T	G	I	A	M	A	E	A	I	K	W	D	L	E	D	K	P	V
Template Known Secondary structure				S					S	S															T		.	.	.	T	T	S			B		S	B												T	S	S								T																T	T
Template Predicted Secondary structure																											.	.	.
Template SS confidence
	256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.				.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	P	L	L	V	F	V	P	S	K	L	K	L	R	G	T	T
Query Conservation
Alig confidence	.
Template Conservation	.
Template Sequence	.	P	T	V	Y	S	G	D	F	E	I	V	T	K	A	D	S
Template Known Secondary structure	.		S											T	T	S
Template Predicted Secondary structure	.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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