Job Description P06846 Confidence 99.87% Date Thu Jan 5 10:59:26 GMT 2012 Rank 62 Aligned Residues 236 % Identity 11% Template c3rotA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc sugar transporter, periplasmic sugar binding protein; PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila Resolution 1.91 Å

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		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.												.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.												.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.												.	.	.
Query Sequence		Q	E	L	E	I	N	D	P	Y	Y	L	A	I	R	H	G	I	E	T	Q	C	E	K	L	G	I	E	L	T	N	C	Y	E	H	S	G	L	P	D	I	.	.	.	.	.	.	.	.	.	.	.	K	N	V	T	G	I	L	I	V	G	K	.	.	.	P	T	P	A	L	R	A	A	A	S	A	L	T	D	N
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.												.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Conservation
Template Sequence		I	T	H	G	S	Q	D	P	Y	W	T	S	L	F	Q	G	A	K	K	A	A	E	E	L	K	V	D	L	Q	I	L	A	P	P	G	A	N	D	V	P	K	Q	V	Q	F	I	E	S	A	L	A	T	Y	P	S	G	I	A	T	T	I	P	S	D	T	A	F	S	K	S	L	Q	R	A	N	K	L	N	I	P
Template Known Secondary structure				S				S																		T									S	S	S																T			S									S	S	T	T											T
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150					.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure														.	.	.	.																						.	.
Query SS confidence														.	.	.	.																						.	.
Query Sequence		I	C	F	I	D	F	H	E	P	G	S	G	.	.	.	.	Y	D	A	V	D	I	D	L	A	R	I	S	K	E	I	I	D	F	Y	I	N	.	.	Q	G	V	N	R	I	G	F	I	G	G	E	D	E	P	G	K	A	D	I	R	E	V	A	F	A	E	Y	G	R	L	K	Q	V	V	R	E	E	D	I	W
Query Conservation														.	.	.	.																						.	.
Alig confidence														.	.	.	.																						.	.																																				.	.
Template Conservation																																																																												.	.
Template Sequence		V	I	A	V	D	T	R	P	K	D	K	T	K	N	P	Y	L	V	F	L	G	S	D	N	L	L	A	G	K	K	L	G	E	K	A	L	E	L	T	P	S	A	K	R	A	L	V	L	N	P	Q	P	G	H	I	G	L	E	K	R	A	Y	G	I	K	T	I	L	Q	D	K	G	I	F	.	.	F	E	E	L
Template Known Secondary structure						S				S		T	T	T	S			S																							T	T									S		T	T																		T	T			.	.
Template Predicted Secondary structure																																																																												.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.			.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.			.	.	.	.	.	.	.
Predicted Secondary structure																																															.																		.								.	.
Query SS confidence																																															.																		.								.	.
Query Sequence		R	G	G	F	S	S	S	S	G	Y	E	L	A	K	Q	M	L	A	R	E	D	Y	P	K	A	L	F	V	A	S	D	S	I	A	I	G	V	L	R	A	I	H	E	R	G	.	L	N	I	P	Q	D	I	S	L	I	S	V	N	D	I	P	T	.	A	R	F	T	F	P	P	.	.	L	S	T	V	R	I	H
Query Conservation																																															.																		.								.	.
Alig confidence																																															.																		.								.	.
Template Conservation
Template Sequence		D	V	G	T	D	P	N	Q	V	Q	S	R	V	K	S	Y	F	K	I	H	P	E	T	N	I	I	F	C	L	T	S	Q	A	L	D	P	L	G	Q	X	L	L	H	P	D	R	Y	D	F	N	Y	Q	P	Q	V	Y	S	F	D	K	T	P	N	T	V	S	L	I	H	K	K	L	V	N	Y	V	X	D	Q	Q
Template Known Secondary structure					S																	T	T							S	S													S					T																						T	T	S
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	M	M	G	S	Q	G	V	N	L	V	Y	E	K	A	R	D	G	R	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	F	L	X	G	Y	L	S	I	T	Q	L	V	L	X	N	R	Y	Q	L	N	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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