Job Description P06846 Confidence 99.57% Date Thu Jan 5 10:59:26 GMT 2012 Rank 73 Aligned Residues 240 % Identity 14% Template c3lftA_ PDB info PDB header:structure genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the abc domain in complex with l-trp from2 streptococcus pneumonia to 1.35a Resolution 1.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.						.	100	.	.	.	.	.	.	.	.	.	110	.	.										.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																										.	.	.	.	.															.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.															.	.	.	.	.	.	.	.	.
Query Sequence		L	E	I	N	D	P	Y	Y	L	A	I	R	H	G	I	E	T	Q	C	E	K	L	G	I	.	.	.	.	.	E	L	T	N	C	Y	E	H	S	G	L	P	D	I	.	.	.	.	.	.	.	.	.	K	N	V	T	G	I	L	I	V	G	K	P	T	P	A	L	R	A	A	A	S	A	L	T	D	N	I	C
Query Conservation																										.	.	.	.	.															.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	F	V	S	H	P	S	L	D	L	I	Y	K	G	I	Q	D	G	L	A	E	E	G	Y	K	D	D	Q	V	K	I	D	F	X	N	S	E	G	D	Q	S	K	V	A	T	X	S	K	Q	L	V	A	N	G	N	D	L	V	V	G	I	A	T	P	A	A	Q	G	L	A	S	A	T	K	D	L	P	V	I	X
Template Known Secondary structure				S																			T	T			G	G	G									T	T													T	T	S	S		S						S												S	S	S
Template Predicted Secondary structure
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150												.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	I	D	F	H	E	P	G	S	G	.	.	.	.	.	.	.	.	.	.	.	Y	D	A	V	D	I	D	L	A	R	I	S	K	E	I	I	D	F	Y	I	N	Q	G	V	N	R	I	G	F	I	G	G	E	D	E	P	G	K	A	D	I	R	E	V	A	F	A	E	Y	G	R	L	K	Q	V	V	R	E	E
Query Conservation												.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.																															.
Template Conservation																																																					.
Template Sequence		A	A	I	T	D	P	I	G	A	N	L	V	K	D	L	K	K	P	G	G	N	V	T	G	V	S	D	H	N	P	A	Q	Q	Q	V	E	L	I	K	A	L	T	P	N	V	K	T	I	G	A	L	.	Y	S	S	S	E	D	N	S	K	T	Q	V	E	E	F	K	A	Y	A	E	K	A	G	L	T	V	E	T
Template Known Secondary structure			S		S		T	T	T	T	T	S		S		S	S				S	S																						T	T								.			T	T																		T	T
Template Predicted Secondary structure																																																					.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	W	R	G	G	F	S	S	S	S	G	Y	E	L	A	K	Q	M	L	A	R	E	D	Y	P	K	A	L	F	V	A	S	D	S	I	A	I	G	V	L	R	A	I	H	E	R	G	L	N	I	P	Q	D	I	S	L	I	S	V	N	D	I	P	T	A	R	F	T	F	P	P	L	S	T	V	R	I	H	S
Query Conservation
Alig confidence								.	.	.	.	.	.																																									.	.									.	.	.
Template Conservation								.	.	.	.	.	.																																									.	.									.	.	.
Template Sequence		F	A	V	P	S	T	.	.	.	.	.	.	N	E	I	A	S	T	V	T	V	X	T	S	K	V	D	A	I	W	V	P	I	D	N	T	I	A	S	G	F	P	T	V	V	S	S	N	Q	S	S	K	.	.	K	P	I	Y	P	S	A	T	.	.	.	A	X	V	E	V	G	G	L	A	S	V	V	I	D	Q
Template Known Secondary structure					S	S	G	.	.	.	.	.	.	G	G									T	T	T		S						S							T								T	T	T	T		.	.						S	S		.	.	.				T	T	T
Template Predicted Secondary structure								.	.	.	.	.	.																																									.	.									.	.	.
Template SS confidence
		216	.	.	.	220	.							.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.				270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		E	M	M	G	S	Q	G	V	N	L	V	Y	E	K	A	R	D	G	R	.	.	A	L	P	L	L	V	F	V	P	S	K	L	K	L	R	G	T	T
Query Conservation																					.	.
Alig confidence																					.	.
Template Conservation
Template Sequence		H	D	L	G	V	A	T	G	K	X	I	V	Q	V	L	K	G	A	K	P	A	D	T	P	V	N	V	F	S	T	G	K	S	V	I	N	K	K	I
Template Known Secondary structure																	T	T			G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions