Job Description P06846 Confidence 99.96% Date Thu Jan 5 10:59:26 GMT 2012 Rank 45 Aligned Residues 254 % Identity 15% Template c3l6uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system periplasmic PDBTitle: crystal structure of abc-type sugar transport system,2 periplasmic component from exiguobacterium sibiricum Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.										.	.	.	.	.	.	.	120	.				.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.										.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.										.	.	.
Query Sequence		N	Q	H	H	I	L	A	I	Y	S	Y	Q	Q	E	L	E	I	N	D	P	Y	Y	L	A	I	R	H	G	I	E	T	Q	C	E	K	L	G	I	E	L	T	N	C	Y	E	H	S	G	L	P	D	I	.	.	.	.	.	.	.	.	.	K	N	V	T	G	I	L	I	V	.	.	.	G	K	P	T	P	A	L
Query Conservation																																																						.	.	.	.	.	.	.	.	.										.	.	.
Alig confidence									.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation									.	.	.	.	.	.	.
Template Sequence		N	I	V	G	F	T	I	.	.	.	.	.	.	.	V	N	D	K	H	E	F	A	Q	R	L	I	N	A	F	K	A	E	A	K	A	N	K	Y	E	A	L	V	A	T	S	Q	N	S	R	I	S	E	R	E	Q	I	L	E	F	V	H	L	K	V	D	A	I	F	I	T	T	L	D	D	V	Y	I	G	S	A
Template Known Secondary structure									.	.	.	.	.	.	.	S		S		S																	T	T									S	S															T	T		S							S		T	T	T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.								.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.								.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																		.																													.	.	.	.	.	.	.
Query SS confidence																		.																													.	.	.	.	.	.	.
Query Sequence		R	A	A	A	S	A	L	T	D	N	I	C	F	I	D	F	.	H	E	P	G	S	G	Y	D	A	V	D	I	D	L	A	R	I	S	K	E	I	I	D	F	Y	I	N	Q	.	.	.	.	.	.	.	G	V	N	R	I	G	F	I	G	G	E	D	E	P	G	K	A	D	I	R	E	V	A	F	A	E	Y	G
Query Conservation																		.																													.	.	.	.	.	.	.
Alig confidence																		.																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	E	E	A	K	K	A	G	I	P	V	F	A	I	D	R	X	I	R	S	D	A	V	V	S	S	I	T	S	N	N	Q	X	I	G	E	Q	L	A	S	Y	I	K	N	E	L	I	K	Q	T	G	R	S	T	G	R	I	V	E	I	T	G	T	A	N	V	Y	T	T	N	E	R	H	R	G	F	L	K	G	I
Template Known Secondary structure								T	T							S	S					T	T		S																											S		S										S	T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	K	Q	V	V	R	E	E	D	I	W	R	G	G	F	S	S	S	S	G	Y	E	L	A	K	Q	M	L	A	R	E	D	Y	P	K	A	L	F	V	A	S	D	S	I	A	I	G	V	L	R	A	I	H	E	R	G	L	N	I	P	Q	D	I	S	L	I	S	V	N	D	I	P	T	A	R	F	T	F	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	E	P	T	L	S	I	V	D	S	V	S	G	N	Y	D	P	V	T	S	E	R	V	X	R	Q	V	I	D	S	G	I	P	F	D	A	V	Y	C	H	N	D	D	I	A	X	G	V	L	E	A	L	K	K	A	K	I	S	G	K	I	V	V	G	I	D	G	N	R	A	I	L	E	A	V	D	X	K	S
Template Known Secondary structure		T	T		T	T										T	T															T	T				S					S	S														T	T																					T	T	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	S	T	V	R	I	H	S	E	M	M	G	S	Q	G	V	N	L	V	Y	E	K	A	R	D	G	R	A	L	P	L	L	V	F	V	P	S	K	L	K	L
Query Conservation
Alig confidence																																	.
Template Conservation																																	.
Template Sequence		X	D	A	T	V	V	Q	S	A	E	E	X	X	K	V	A	F	S	A	L	K	L	H	T	K	N	K	K	I	P	D	.	R	F	Y	T	Y	S	Y	L	Y	D
Template Known Secondary structure		S																								T	T					S	.
Template Predicted Secondary structure																																	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions