Job Description P06846 Confidence 99.97% Date Thu Jan 5 10:59:26 GMT 2012 Rank 34 Aligned Residues 253 % Identity 17% Template c3hs3A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:ribose operon repressor; PDBTitle: crystal structure of periplasmic binding ribose operon2 repressor protein from lactobacillus acidophilus Resolution 1.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.											.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	V	N	Q	H	H	I	L	A	I	Y	S	Y	Q	Q	E	L	E	I	N	D	P	Y	Y	L	A	I	R	H	G	I	E	T	Q	C	E	K	L	G	I	E	L	T	N	C	Y	E	H	S	G	L	P	D	I	.	.	.	.	.	.	.	.	.	.	K	N	V	T	G	I	L	I	V	G	K	P	T	P	A
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.															.
Template Conservation												.	.	.	.	.	.	.																																																															.
Template Sequence		K	K	S	K	M	I	G	I	I	I	.	.	.	.	.	.	.	P	D	L	N	N	R	F	Y	A	Q	I	I	D	G	I	Q	E	V	I	Q	K	E	G	Y	T	A	L	I	S	F	S	T	N	S	D	V	K	K	Y	Q	N	A	I	I	N	F	E	N	N	N	V	D	G	I	I	T	S	A	F	T	I	P	.
Template Known Secondary structure												.	.	.	.	.	.	.	S		T	T	S																	T	T									S	S																T	T		S											.
Template Predicted Secondary structure												.	.	.	.	.	.	.																																																															.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.								.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	A	A	A	S	A	L	T	D	N	I	C	F	I	D	F	H	E	P	G	S	G	Y	D	A	V	D	I	D	L	A	R	I	S	K	E	I	I	D	F	Y	I	N	Q	G	V	N	R	I	G	F	I	G	G	E	D	E	P	G	K	A	D	I	R	E	V	A	F	A	E	Y	G	R	L	K	Q	V	V	R
Query Conservation
Alig confidence		.	.	.																																							.																																				.	.	.
Template Conservation		.	.	.																																							.																																				.	.	.
Template Sequence		.	.	.	P	N	F	H	L	N	T	P	L	V	M	Y	D	S	A	N	I	N	D	D	I	V	R	I	V	S	N	N	T	K	G	G	K	E	S	I	K	L	.	L	S	K	K	I	E	K	V	L	I	Q	H	W	P	L	S	L	P	T	I	R	E	R	I	E	A	M	T	A	E	A	S	K	L	K	.	.	.
Template Known Secondary structure		.	.	.	T	T				S	S						S						S	S	S																	T	.	S		T	T									S		T	T	S																	T	T	.	.	.
Template Predicted Secondary structure		.	.	.																																							.																																				.	.	.
Template SS confidence
					129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	D	I	W	R	G	G	F	S	S	S	S	G	Y	E	L	A	K	Q	M	L	A	R	E	D	Y	P	K	A	L	F	V	A	S	D	S	I	A	I	G	V	L	R	A	I	H	E	R	G	L	N	I	P	Q	D	I	S	L	I	S	V	N	D	I	P	T	A	R	F	T	F	P	P	L	S	T	V	R	I
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	I	D	Y	L	L	E	E	T	P	E	N	N	P	Y	I	S	A	Q	S	A	L	N	K	S	N	Q	F	D	A	I	I	T	V	N	D	L	Y	A	A	E	I	I	K	E	A	K	R	R	N	L	K	I	P	D	D	F	Q	L	V	G	Y	D	N	N	I	L	C	G	Y	T	S	P	T	I	S	T	I	D	Q
Template Known Secondary structure		.										S	S												T	G	G	G		S					S	S														T	T			T	T	T	T						S	B			G	G	G	G	T	S	S	S			B
Template Predicted Secondary structure		.
Template SS confidence
			202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	E	M	M	G	S	Q	G	V	N	L	V	Y	E	K	A	R	D	G	R	A	L	P	L	L	V	F	V	P	S	K	L	K	L	R	G	T	T	R
Query Conservation
Alig confidence																										.
Template Conservation																										.
Template Sequence		N	P	K	L	I	G	Q	T	A	A	H	R	L	L	D	L	M	S	G	N	N	S	T	R	.	N	S	I	I	D	V	L	P	I	K	R	D	S	T	E
Template Known Secondary structure																		T	T	T						.
Template Predicted Secondary structure																										.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions