Job Description P06846 Confidence 99.90% Date Thu Jan 5 10:59:26 GMT 2012 Rank 57 Aligned Residues 234 % Identity 14% Template c3h75A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:periplasmic sugar-binding domain protein; PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens Resolution 1.60 Å

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		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.										.	.	.	.	.	.	.	120	.	.	.	.	.	.					.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.															.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.															.	.	.	.
Query Sequence		N	D	P	Y	Y	L	A	I	R	H	G	I	E	T	Q	C	E	K	L	G	I	E	L	T	N	C	Y	E	H	S	G	L	P	D	I	.	.	.	.	.	.	.	.	.	K	N	V	T	G	I	L	I	V	G	K	P	T	P	.	.	.	.	A	L	R	A	A	A	S	A	L	T	D	N	I	C	F	I	D	F
Query Conservation																																					.	.	.	.	.	.	.	.	.															.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation
Template Sequence		T	E	T	F	W	V	S	Y	S	Q	F	X	Q	A	A	A	R	D	L	G	L	D	L	R	I	L	Y	A	E	R	D	P	Q	N	T	L	Q	Q	A	R	E	L	F	Q	G	R	D	K	P	D	Y	L	X	L	V	N	E	Q	Y	V	A	P	Q	I	L	R	L	S	Q	G	S	G	I	K	L	F	I	V	N	S
Template Known Secondary structure		T																			T									T	T															S	S	S			S								S	S										T	T	S									S
Template Predicted Secondary structure
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		145	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.								.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure								.	.																										.	.	.	.	.	.	.
Query SS confidence								.	.																										.	.	.	.	.	.	.
Query Sequence		H	E	P	G	S	G	.	.	Y	D	A	V	D	I	D	L	A	R	I	S	K	E	I	I	D	F	Y	I	N	Q	G	V	N	.	.	.	.	.	.	.	R	I	G	F	I	G	G	E	D	E	P	G	K	A	D	I	R	E	V	A	F	A	E	Y	G	R	L	K	Q	V	V	R	E	E	D	I	W	R	G	G
Query Conservation								.	.																										.	.	.	.	.	.	.
Alig confidence								.	.																										.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	T	L	D	Q	R	W	I	G	S	X	V	G	D	D	E	E	A	G	Y	R	X	L	K	E	L	L	H	K	L	G	P	V	P	A	G	H	G	I	E	L	L	A	F	S	G	L	K	V	T	P	A	A	Q	L	R	E	R	G	L	R	R	A	L	A	E	H	P	Q	V	H	L	R	Q	L	V	Y	G	E
Template Known Secondary structure					T	T	T																														S	S										S		T	T	S																		T	T										T
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		F	S	S	S	S	G	Y	E	L	A	K	Q	M	L	A	R	E	D	Y	P	K	A	L	F	V	A	S	D	S	I	A	I	G	V	L	R	A	I	H	E	R	G	L	N	I	P	Q	D	I	S	L	I	S	V	N	D	I	P	.	.	T	A	R	F	T	F	P	P	L	S	T	V	R	I	H	S	E	M	M	G
Query Conservation																																																												.	.
Alig confidence																																																												.	.
Template Conservation
Template Sequence		W	N	R	E	R	A	Y	R	Q	A	Q	Q	L	L	K	R	Y	P	K	T	Q	L	V	W	S	A	N	D	E	X	A	L	G	A	X	Q	A	A	R	E	L	G	R	K	P	G	T	D	L	L	F	S	G	V	N	S	S	P	E	A	L	Q	A	L	I	D	G	K	L	S	V	L	E	A	G	H	F	T	L	G
Template Known Secondary structure		T																	T	T							S	S														T	T			B	T	T	T	B						S												T	S	S							G	G	G
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	G	V	N	L	V	Y	E	K	A	R	D	G	R	A	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	W	A	L	V	A	L	H	D	D	A	L	G	L	D	A	R	R
Template Known Secondary structure													T	T			S	T	T
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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