Job Description P06846 Confidence 99.92% Date Thu Jan 5 10:59:26 GMT 2012 Rank 53 Aligned Residues 247 % Identity 15% Template c3g1wB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:sugar abc transporter; PDBTitle: crystal structure of sugar abc transporter (sugar-binding protein)2 from bacillus halodurans Resolution 2.02 Å

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		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.										.	.	.	.	.	.	.	120	.	.				.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																												.										.	.	.	.	.	.	.	.	.											.	.	.
Query SS confidence																												.										.	.	.	.	.	.	.	.	.											.	.	.
Query Sequence		N	D	P	Y	Y	L	A	I	R	H	G	I	E	T	Q	C	E	K	L	G	I	E	L	T	N	C	.	Y	E	H	S	G	L	P	D	I	.	.	.	.	.	.	.	.	.	K	N	V	T	G	I	L	I	V	G	.	.	.	K	P	T	P	A	L	R	A	A	A	S	A	L	T	D	N	I	C	F	I	D	F
Query Conservation																												.										.	.	.	.	.	.	.	.	.											.	.	.
Alig confidence																												.										.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation
Template Sequence		G	X	D	Y	W	K	R	C	L	K	G	F	E	D	A	A	Q	A	L	N	V	T	V	E	Y	R	G	A	A	Q	Y	D	I	Q	E	Q	I	T	V	L	E	Q	A	I	A	K	N	P	A	G	I	A	I	S	A	I	D	P	V	E	L	T	D	T	I	N	K	A	V	D	A	G	I	P	I	V	L	F	D	S
Template Known Secondary structure		T	S	T																	T									S	S	S																		S							S	S	T	T	T	T										T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																										.	.																																								.
Query SS confidence																										.	.																																								.
Query Sequence		H	E	P	G	S	G	Y	D	A	V	D	I	D	L	A	R	I	S	K	E	I	I	D	F	.	.	Y	I	N	Q	G	V	N	R	I	G	F	I	G	G	E	D	E	P	G	K	A	D	I	R	E	V	A	F	A	E	Y	G	R	L	K	Q	V	V	R	.	E	E	D	I	W	R	G	G	F	S	S	S	S	G
Query Conservation																										.	.																																								.
Alig confidence																										.	.																																								.
Template Conservation
Template Sequence		G	A	P	D	S	H	A	H	S	F	L	G	T	N	N	Y	N	A	G	X	N	A	A	Y	K	X	A	E	L	L	D	G	E	G	E	V	A	V	I	T	L	P	N	Q	L	N	H	Q	E	R	T	T	G	F	K	E	T	L	E	A	E	F	P	A	I	E	V	I	A	V	E	D	G	R	G	D	S	L	H	S
Template Known Secondary structure				T	T	S			S																						T	T	T										T	T																				T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.				.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.
Query SS confidence																																																														.	.	.
Query Sequence		Y	E	L	A	K	Q	M	L	A	R	E	D	Y	P	K	A	L	F	V	A	S	D	S	I	A	I	G	V	L	R	A	I	H	E	R	G	L	N	I	P	Q	D	I	S	L	I	S	V	N	D	I	P	T	A	R	F	T	F	P	P	.	.	.	L	S	T	V	R	I	H	S	E	M	M	G	S	Q	G	V	N
Query Conservation																																																														.	.	.
Alig confidence																																						.	.																							.	.	.
Template Conservation																																						.	.
Template Sequence		R	R	V	A	H	Q	L	L	E	D	Y	P	N	L	A	G	I	F	A	T	E	A	N	G	G	V	G	V	G	D	A	V	R	L	E	S	.	.	R	A	G	E	I	Q	I	I	S	F	D	T	D	K	G	T	L	D	L	V	D	E	G	I	I	S	A	T	L	A	Q	G	T	W	N	X	G	Y	W	S	L	T
Template Known Secondary structure													T	T							S	S														T	T	.	.		T	T	T	S						S											T	T	S	S
Template Predicted Secondary structure																																						.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		299	300	.	.	.	.	.	.	.	.	.	310										.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.
Query Sequence		L	V	Y	E	K	A	R	D	G	R	A	L	.	.	.	.	.	.	.	.	.	P	L	L	V	F	V	P	S	K	L	K	L	R	G	T	T
Query Conservation														.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	L	F	H	L	H	H	G	L	T	E	P	Q	I	L	R	E	E	A	P	L	P	L	Y	V	D	T	G	I	T	I	V	T	D	E	N	V
Template Known Secondary structure								T	T		S			B						B		S		S											T	T	T	G
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions