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Job DescriptionP06846
Confidence100.00%DateThu Jan 5 10:59:26 GMT 2012
Rank18Aligned Residues252
% Identity19%Templatec3d8uA_
PDB info PDB header:transcription regulatorChain: A: PDB Molecule:purr transcriptional regulator; PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633
Resolution2.88 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   61........70.........80.........90.........100.........110.. .......120.........130
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Query Sequence  NQHHILAIYSYQQELEINDPYYLAIRHGIETQCEKLGIELTNCYEHSGLPDI. . . . . . . . . . KNVTGILIVGKPTPALRA
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Template Sequence  YSIALII. . . . . . . PSLFEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQ
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   71...... ..80.........90.........100.........110.........120.........130.........140...
 
   131........140.........150.........160.........170.........180.........190.........200.........210
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Query Sequence  AASALTDNICFIDFHEPGSGYDAVDIDLARISKEIIDFYINQGVNRIGFIGGEDEPGKADIREVAFAEYGRLKQVVREED
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Template Sequence  LLEASNTPVLEIAELSSKASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAXIENYLTPDHF
Template Known Secondary structure  T

SSS
SSSSS
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   144.....150.........160.........170.........180.........190.........200.........210.........220...
 
   211 ........220.........230.........240.........250.........260.........270.........280.........
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Query Sequence  I. WRGGFSSSSGYELAKQMLAREDYPKALFVASDSIAIGVLRAIHERGLNIPQDISLISVNDIPTARFTFPPLSTVRIHS
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Template Sequence  LTTHEAPSSQLGAEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLKVPTDIAIICLEGSSXGEHAYPSLTSAEFDY
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SS


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   224.....230.........240.........250.........260.........270.........280.........290.........300...
 
   290.........300.........310.........320......
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Query Sequence  EMMGSQGVNLVYEKARDGRALPLLVFVPSKLKLRGTT
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Template Sequence  ERXGTKAAEKLLHAIKGES. . . . . . . XGFKLKRRAST
Template Known Secondary structure  S


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TT
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   304.....310.........320.. .......330...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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