Job Description P06846 Confidence 100.00% Date Thu Jan 5 10:59:26 GMT 2012 Rank 14 Aligned Residues 253 % Identity 20% Template c3clkB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcription regulator; PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum Resolution 2.08 Å

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.					.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																				.	.	.	.
Query SS confidence																																				.	.	.	.
Query Sequence		L	E	I	N	D	P	Y	Y	L	A	I	R	H	G	I	E	T	Q	C	E	K	L	G	I	E	L	T	N	C	Y	E	H	S	G	.	.	.	.	L	P	D	I	K	N	V	T	G	I	L	I	V	G	K	P	T	P	A	L	R	A	A	A	S	A	L	T	D	N	I	C	F	I	D	F	H	E	P	G	S	G
Query Conservation																																				.	.	.	.
Alig confidence																																				.	.	.	.
Template Conservation
Template Sequence		A	A	V	V	S	N	F	A	Q	Q	I	L	D	G	I	Q	E	E	A	H	K	N	G	Y	N	L	I	I	V	Y	E	E	Q	K	H	A	L	L	T	A	I	E	R	P	V	X	G	I	L	L	L	S	I	A	L	T	D	D	N	L	Q	L	L	Q	S	S	D	V	P	Y	C	F	L	S	X	G	F	D	D	D
Template Known Secondary structure																					T	T	T	T																				S			S						S														T	T							S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	A	V	D	I	D	L	A	R	I	S	K	E	I	I	D	F	Y	I	N	Q	G	V	N	R	I	G	F	I	G	G	E	D	E	P	G	K	A	D	I	R	E	V	A	F	A	E	Y	G	R	L	K	Q	V	V	R	E	E	D	I	W	R	G	G	F	S	S	S	S	G	Y	E	L	A	K	Q	M	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	P	F	I	S	S	D	D	E	D	I	G	Y	Q	A	T	N	L	L	I	N	E	G	H	R	Q	I	G	I	A	G	I	D	Q	Y	P	Y	T	G	R	K	R	L	A	G	Y	K	K	A	L	K	E	A	N	I	A	I	N	Q	E	W	I	K	P	G	D	Y	S	Y	T	S	G	E	Q	A	X	K	A	F	G
Template Known Secondary structure																						T	T	T			S					S				S	S																	T	T					G	G	G						S	S
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		R	E	D	Y	P	K	A	L	F	V	A	S	D	S	I	A	I	G	V	L	R	A	I	H	E	R	G	L	N	I	P	Q	D	I	S	L	I	S	V	N	D	I	P	T	A	R	F	T	F	P	P	L	S	T	V	R	I	H	S	E	M	M	G	S	Q	G	V	N	L	V	Y	E	K	A	R	D	G	.	R	A
Query Conservation																																																																															.
Alig confidence																																																																															.
Template Conservation
Template Sequence		K	N	T	D	L	T	G	I	I	A	A	S	D	X	T	A	I	G	I	L	N	Q	A	S	S	F	G	I	E	V	P	K	D	L	S	I	V	S	I	D	G	T	E	X	C	K	I	T	R	P	Q	L	T	S	I	S	Q	D	F	F	Q	X	G	V	T	G	V	Q	Q	I	H	Q	S	V	K	N	G	S	N	R
Template Known Secondary structure		T	T				S					S	S														T	T			T	T	T	T										G	G	G	G	S	S	S	S																										T	S
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	L	L	V	F	V	P	S	K	L	K	L	R	G	T	T	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	S	Q	Q	F	I	P	V	N	P	V	I	R	K	S	T	A
Template Known Secondary structure																S	S
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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