Job Description P06846 Confidence 99.90% Date Thu Jan 5 10:59:26 GMT 2012 Rank 58 Aligned Residues 258 % Identity 14% Template c2rjoA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans Resolution 2.05 Å

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		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.										.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.																	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.																	.	.
Query Sequence		V	N	Q	H	H	I	L	A	I	Y	S	Y	Q	Q	E	L	E	I	N	D	P	Y	Y	L	A	I	R	H	G	I	E	T	Q	C	E	K	L	G	I	E	L	T	N	C	Y	E	H	S	G	L	P	D	I	.	.	.	.	.	.	.	.	.	K	N	V	T	G	I	L	I	V	G	K	P	T	P	A	L	.	.
Query Conservation																																																							.	.	.	.	.	.	.	.	.																	.	.
Alig confidence										.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.																	.	.
Template Conservation										.	.	.	.	.	.	.
Template Sequence		Q	T	T	L	A	C	S	F	.	.	.	.	.	.	.	R	S	L	T	N	P	Y	Y	T	A	F	N	K	G	A	Q	S	F	A	K	S	V	G	L	P	Y	V	P	L	T	T	E	G	S	S	E	K	G	I	A	D	I	R	A	L	L	Q	K	T	G	G	N	L	V	L	N	V	D	P	N	D	S	A	D	A
Template Known Secondary structure										.	.	.	.	.	.	.	S		T	T	S																		T									T	T																T	T	T									S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.
Template SS confidence
		40	.	.	.	.	.	.	.								.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
					129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150									.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure		.	.	.																							.	.	.	.	.	.	.	.																							.	.
Query SS confidence		.	.	.																							.	.	.	.	.	.	.	.																							.	.
Query Sequence		.	.	.	R	A	A	A	S	A	L	T	D	N	I	C	F	I	D	F	H	E	P	G	S	G	.	.	.	.	.	.	.	.	Y	D	A	V	D	I	D	L	A	R	I	S	K	E	I	I	D	F	Y	I	N	Q	.	.	G	V	N	R	I	G	F	I	G	G	E	D	E	P	G	K	A	D	I	R	E	V	A
Query Conservation		.	.	.																							.	.	.	.	.	.	.	.																							.	.
Alig confidence		.	.	.																							.	.	.	.	.	.	.	.																							.	.
Template Conservation
Template Sequence		R	V	I	V	E	A	C	S	K	A	G	A	Y	V	T	T	I	W	N	K	P	K	D	L	H	P	W	D	Y	N	P	N	Y	V	A	H	L	S	Y	D	G	V	A	Y	G	E	E	T	A	T	Q	L	F	K	S	X	G	G	K	G	G	V	V	A	L	G	G	I	F	S	N	V	P	A	I	E	R	K	A	G
Template Known Secondary structure												T							S				T	T			G	G	G	G	T	T	T																								T	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		F	A	E	Y	G	R	L	K	Q	V	V	R	E	E	D	I	W	R	G	G	F	S	S	S	S	G	Y	E	L	A	K	Q	M	.	L	A	R	E	D	Y	P	K	A	L	F	V	A	S	D	S	I	A	I	G	V	L	R	A	I	H	E	R	G	L	N	I	P	Q	D	I	S	L	I	S	V	N	D	I	P	T
Query Conservation																																			.
Alig confidence																																			.																															.	.
Template Conservation																																																																		.	.
Template Sequence		L	D	A	A	L	K	K	F	P	G	I	Q	L	L	D	F	Q	V	A	D	W	N	S	Q	K	A	F	P	I	X	Q	A	W	X	T	R	F	N	S	K	I	K	G	V	W	A	A	N	D	D	X	A	L	G	A	I	E	A	L	R	A	E	G	L	.	.	A	G	Q	I	P	V	T	G	X	D	G	T	Q	P
Template Known Secondary structure								T		T	T										T	T																	G	G	G							S	S														T	T		.	.	B	T	T	B					S	B
Template Predicted Secondary structure																																																																		.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270
		275	.	.	.				.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.							.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure						.	.	.																																		.	.	.	.	.	.
Query SS confidence						.	.	.																																		.	.	.	.	.	.
Query Sequence		A	R	F	T	.	.	.	F	P	P	L	S	T	V	R	I	H	S	E	M	M	G	S	Q	G	V	N	L	V	Y	E	K	A	R	D	G	R	A	L	P	.	.	.	.	.	.	L	L	V	F	V	P	S	K	L	K	L	R	G	T	T
Query Conservation						.	.	.																																		.	.	.	.	.	.
Alig confidence						.	.	.																																		.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	V	A	I	K	S	G	E	L	V	A	S	V	D	W	D	P	F	W	L	G	G	I	G	L	S	X	G	L	Q	A	K	E	K	K	I	D	L	A	T	L	P	K	D	R	R	E	S	F	C	T	A	T	F	V	T	K	T	N	V
Template Known Secondary structure								T	T	S			B																						T	T		S		G	G	G	S		G	G	G	T											T	T	T
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions