Job Description P06846 Confidence 99.57% Date Thu Jan 5 10:59:26 GMT 2012 Rank 72 Aligned Residues 247 % Identity 15% Template c2qh8A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of conserved domain protein from vibrio2 cholerae o1 biovar eltor str. n16961 Resolution 2.20 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.										.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Query Sequence		A	V	N	Q	H	H	I	L	A	I	Y	S	Y	Q	Q	E	L	E	I	N	D	P	Y	Y	L	A	I	R	H	G	I	E	T	Q	C	E	K	L	G	I	.	.	.	.	.	.	E	L	T	N	C	Y	E	H	S	G	L	P	D	I	.	.	.	.	.	.	.	.	.	K	N	V	T	G	I	L	I	V	G	K
Query Conservation																																										.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.																									.	.	.	.	.	.															.	.	.	.	.	.	.	.	.											.
Template Conservation										.	.	.	.	.	.	.	.																																																																.
Template Sequence		K	T	A	K	V	A	V	S	.	.	.	.	.	.	.	.	Q	I	V	E	H	P	A	L	D	A	T	R	Q	G	L	L	D	G	L	K	A	K	G	Y	E	E	G	K	N	L	E	F	D	Y	K	T	A	Q	G	N	P	A	I	A	V	Q	I	A	R	Q	F	V	G	E	N	P	D	V	L	V	G	I	A	.
Template Known Secondary structure										.	.	.	.	.	.	.	.		S	S																			T	T			B	T	T	T									T	T															T			S						S	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.																																																																.
Template SS confidence
		26	.	.	.	30	.	.	.									.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.													.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	T	P	A	L	R	A	A	A	S	A	L	T	D	N	I	C	F	I	.	.	.	.	.	.	.	.	.	.	.	.	D	F	H	E	P	G	S	G	Y	D	A	V	D	I	D	L	A	R	I	S	K	E	I	I	D	F	Y	I	N	Q	G	V	N	R	I	G	F	I	G	G	E	D	E	P	G	K	A	D	I
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.																																										.
Template Conservation																																																																										.
Template Sequence		T	P	T	A	Q	A	L	V	S	A	T	K	T	I	P	I	V	F	T	A	V	T	D	P	V	G	A	K	L	V	K	Q	L	E	Q	P	G	K	N	V	T	G	L	S	D	L	S	P	V	E	Q	H	V	E	L	I	K	E	I	L	P	N	V	K	S	I	G	V	V	Y	N	P	.	G	E	A	N	A	V	S
Template Known Secondary structure													S	S	S								S		T	T	T	T	T	S		S		S	S	S			S	S																					S	T	T										T	.	T
Template Predicted Secondary structure																																																																										.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	V	A	F	A	E	Y	G	R	L	K	Q	V	V	R	E	E	D	I	W	R	G	G	F	S	S	S	S	G	Y	E	L	A	K	Q	M	L	A	R	E	D	Y	P	K	A	L	F	V	A	S	D	S	I	A	I	G	V	L	R	A	I	H	E	R	G	L	N	I	P	Q	D	I	S	L	I	S	V	N	D
Query Conservation
Alig confidence																										.	.	.	.	.	.																																									.	.
Template Conservation																										.	.	.	.	.	.																																									.	.
Template Sequence		L	X	E	L	L	K	L	S	A	A	K	H	G	I	K	L	V	E	A	T	A	L	K	S	.	.	.	.	.	.	A	D	V	Q	S	A	T	Q	A	I	A	E	K	S	D	V	I	Y	A	L	I	D	N	T	V	A	S	A	I	E	G	X	I	V	A	A	N	Q	A	K	.	.	T	P	V	F	G	A	A	T
Template Known Secondary structure													T	T									S	S	G	.	.	.	.	.	.	G	G									G	G	G		S						S						T	T											T	T	.	.						S	S
Template Predicted Secondary structure																										.	.	.	.	.	.																																									.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.							200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.			.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence		I	P	T	A	R	F	T	F	P	P	L	S	T	V	R	I	H	S	E	M	M	G	S	Q	G	V	N	L	V	Y	E	K	A	R	D	G	R	A	L	P	L	L	V	F	V	.	.	P	S	K	L	K	L	R	G	T	T
Query Conservation																																															.	.
Alig confidence						.	.	.																																							.	.
Template Conservation						.	.	.
Template Sequence		S	Y	V	E	.	.	.	R	G	A	I	A	S	L	G	F	D	Y	Y	Q	I	G	V	Q	T	A	D	Y	V	A	A	I	L	E	G	K	E	P	G	S	L	D	V	Q	V	A	K	G	S	D	L	V	I	N	K	T	A
Template Known Secondary structure						.	.	.	T	T		S																							T	T			G	G	G	S
Template Predicted Secondary structure						.	.	.
Template SS confidence
		248	.	250	.				.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions