Job Description P06846 Confidence 99.96% Date Thu Jan 5 10:59:26 GMT 2012 Rank 43 Aligned Residues 257 % Identity 17% Template c2fn9A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:ribose abc transporter, periplasmic ribose-binding protein; PDBTitle: thermotoga maritima ribose binding protein unliganded form Resolution 1.40 Å

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		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.										.	.	.	.	.	.	.	120	.	.	.	.				.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.													.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.													.	.	.
Query Sequence		N	Q	H	H	I	L	A	I	Y	S	Y	Q	Q	E	L	E	I	N	D	P	Y	Y	L	A	I	R	H	G	I	E	T	Q	C	E	K	L	G	I	E	L	T	N	C	Y	E	H	S	G	L	P	D	I	.	.	.	.	.	.	.	.	.	K	N	V	T	G	I	L	I	V	G	K	P	.	.	.	T	P	A	L
Query Conservation																																																						.	.	.	.	.	.	.	.	.													.	.	.
Alig confidence									.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.													.	.	.
Template Conservation									.	.	.	.	.	.	.
Template Sequence		G	K	M	A	I	V	I	.	.	.	.	.	.	.	S	T	L	N	N	P	W	F	V	V	L	A	E	T	A	K	Q	R	A	E	Q	L	G	Y	E	A	T	I	F	D	S	Q	N	D	T	A	K	E	S	A	H	F	D	A	I	I	A	A	G	Y	D	A	I	I	F	N	P	T	D	A	D	G	S	I	A	N
Template Known Secondary structure									.	.	.	.	.	.	.	S		S	S	S																	T	T									T	T															T	T		S							S		T	T	T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.								.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.									.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.																											.	.	.	.	.	.	.	.
Query SS confidence																								.	.																											.	.	.	.	.	.	.	.
Query Sequence		R	A	A	A	S	A	L	T	D	N	I	C	F	I	D	F	H	E	P	G	S	G	.	.	Y	D	A	V	D	I	D	L	A	R	I	S	K	E	I	I	D	F	Y	I	N	Q	G	V	N	R	.	.	.	.	.	.	.	.	I	G	F	I	G	G	E	D	E	P	G	K	A	D	I	R	E	V	A	F	A	E
Query Conservation																								.	.																											.	.	.	.	.	.	.	.
Alig confidence																								.	.																											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	R	A	K	E	A	G	I	P	V	F	C	V	D	R	G	I	N	A	R	G	L	A	V	A	Q	I	Y	S	D	N	Y	Y	G	G	V	L	A	G	E	Y	F	V	K	F	L	K	E	K	Y	P	D	A	K	E	I	P	Y	A	E	L	L	G	I	L	S	A	Q	P	T	W	D	R	S	N	G	F	H	S
Template Known Secondary structure								T	T							S	S			S		S	S	S	S	S																											S	S		S											T	T
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		Y	G	R	L	K	Q	V	V	R	E	E	D	I	W	R	G	G	F	S	S	S	S	G	Y	E	L	A	K	Q	M	L	A	R	E	D	Y	P	K	A	L	F	V	A	S	D	S	I	A	I	G	V	L	R	A	I	H	E	R	G	L	N	I	P	Q	D	I	S	L	I	S	V	N	D	.	I	P	T	A	R	F
Query Conservation																																																																											.
Alig confidence																																																																											.
Template Conservation
Template Sequence		V	V	D	Q	Y	P	E	F	K	M	V	A	Q	Q	S	A	E	F	D	R	D	T	A	Y	K	V	T	E	Q	I	L	Q	A	H	P	E	I	K	A	I	W	C	G	N	D	A	M	A	L	G	A	M	K	A	C	E	A	A	G	R	T	D	I	Y	I	F	G	F	D	G	A	E	D	V	I	N	A	I	K	E
Template Known Secondary structure				T	T	S	T	T										T	T																	T	T							S	S														T	T		T	T							B											T
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	P	P	L	S	T	V	R	I	H	S	E	M	M	G	S	Q	G	V	N	L	V	Y	E	K	A	R	D	G	R	A	L	P	L	L	V	F	V	P	S	K	L	K	L	R	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	K	Q	I	V	A	T	I	M	Q	F	P	K	L	M	A	R	L	A	V	E	W	A	D	Q	Y	L	R	G	E	R	S	F	P	E	I	V	P	V	T	V	E	L	V	T	R	E
Template Known Secondary structure		T		S																									T	T						S
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions