Job Description P21169 Confidence 99.57% Date Thu Jan 5 11:37:54 GMT 2012 Rank 188 Aligned Residues 298 % Identity 16% Template c3ruyB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ornithine aminotransferase; PDBTitle: crystal structure of the ornithine-oxo acid transaminase rocd from2 bacillus anthracis Resolution 2.65 Å

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		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.											.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.
Query Sequence		H	E	G	S	A	K	D	A	Q	K	F	A	A	K	V	F	H	A	D	K	T	Y	F	V	L	N	G	T	S	A	A	N	K	V	V	T	N	A	L	.	.	.	.	.	.	.	.	.	.	L	T	R	G	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	I	Q	A	G	A	T	P	V	Y
Query Conservation																																									.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.																				.								.	.	.	.
Template Conservation																																																																						.								.	.	.	.
Template Sequence		H	S	D	Q	L	G	P	W	Y	E	K	V	A	K	L	T	N	K	E	M	V	L	P	M	N	T	G	A	E	A	V	E	T	A	I	K	T	A	R	R	W	A	Y	D	V	K	K	V	E	A	N	R	A	E	I	I	V	C	E	D	N	F	H	G	R	T	M	G	.	A	V	S	M	S	S	N	.	.	.	.
Template Known Secondary structure				S	S													T		S						S	S																			T	S				T	T								T	T					S	S			.			T	T		S		.	.	.	.
Template Predicted Secondary structure																																																																						.								.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.	290	.					.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.						.	.	.	.
Query SS confidence																																																							.	.						.	.	.	.
Query Sequence		L	E	A	S	R	N	P	F	G	F	I	G	G	I	D	A	H	C	F	N	E	E	Y	L	R	Q	Q	I	R	D	V	A	P	E	K	A	D	L	P	R	P	Y	R	L	A	I	I	Q	L	G	T	Y	D	.	.	G	T	V	Y	N	.	.	.	.	A	R	Q	V	I	D	T	V	G	H	L	C	D	Y	I	L
Query Conservation																																																							.	.						.	.	.	.
Alig confidence		.	.																																			.	.	.	.	.	.	.	.										.	.						.	.	.	.
Template Conservation		.	.																																			.	.	.	.	.	.	.	.
Template Sequence		.	.	E	E	Y	K	R	G	F	G	P	M	L	P	G	I	I	V	I	P	Y	G	D	L	E	A	L	K	A	A	I	T	P	N	T	A	.	.	.	.	.	.	.	.	A	F	I	L	E	P	I	Q	G	E	A	G	I	N	I	P	P	A	G	F	L	K	E	A	L	E	V	C	K	K	E	N	V	L	F	V
Template Known Secondary structure		.	.	T	T	T	T	T	T			S			S	S						T	T											T	T			.	.	.	.	.	.	.	.						S	S	B	T	T	T	T	S	B				T	T												T	T
Template Predicted Secondary structure		.	.																																			.	.	.	.	.	.	.	.
Template SS confidence
				155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.									.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	S	A	W	V	G	Y	E	Q	F	I	P	M	M	A	D	S	S	P	L	L	L	E	L	N	E	N	D	P	G	I	F	V	T	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	N	H	I	R	G	Q	A	R	F	C	P	H	K	R	L	N	N	A	F	M	L	H	A	S	T
Query Conservation
Alig confidence														.	.	.														.	.	.	.						.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.														.	.	.	.						.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	E	I	Q	T	G	L	G	R	T	G	.	.	.	K	V	F	A	C	D	W	D	N	V	T	P	D	.	.	.	.	M	Y	I	L	G	.	.	A	L	G	G	G	V	F	P	I	S	C	A	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	D	I	L	G	V	F	E	P	G	S	H	G
Template Known Secondary structure					T	T	T	T	T	T	T	T	S	.	.	.	S	S	S	G	G	G	G	G	T				S	.	.	.	.						.	.		T	T	T	T	T	S								.	.	.	.	.	.	.	.	.	.	.	.	.						T	T			T	T	S	S
Template Predicted Secondary structure														.	.	.														.	.	.	.						.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.				.	.	.	240	.	.	.	.	.	.	.	.	.					250	.	.	.	.			.	.	.	.	.	260	.	.	.	.	.	.	.	.														.	270	.	.	.	.	.	.	.	.	.	280	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	F	Y	P	L	F	A	A	L	D	V	N	A	K	I	H	E	G	E	S	G	R	R	L	W	A	E	C	V	E	I	G	I	E	A	R	K	A	I	L	A	R	C	K	L	F	R	P	F	I	P	P	V	V	D	G	K	L	W	Q	D	Y	P	T	S	V	L	A	S	D	R	R	F	F	S	F	E	P	G
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	T	F	G	G	N	P	L	A	C	A	V	S	I	A	A	L	E	V	L	E	E	E	K	L	T	E	R	S	L	Q	L	G	E	K	L	V	G	Q	L	K	E	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	S	T	T																		T	T																	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	W	H	G	F	E	G	Y	A	A	D	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	E	T	G	E	Y	S	D	F	G	V	P	A	T	I	L	A	H	Y	L	R	E	N	G	I	V	P	E	K	C	D	L	N	S	I	L	F	L	L	T	P	A	E	S	H	E	K	L	A	Q	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	M	I	T	E	V	R	G	K	G	L	F	I	G	.	.	.	.	I	E	L	N	E	P	A	R	P	Y	C	E	Q	L	K	A	A	G	L	L	C	K	E	T	H	E	N	V	I	R	I	A	P	P	L	V	I	S	E	E	D	L	E	W	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T								T	T				.	.	.	.				S	S		S											T							T	T	T								T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template SS confidence
																		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.					.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		548	.	550	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	M	L	A	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	Q	K	I	K	A	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions